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* sci-biology/abyss: bump up to 2.0.2, bug #596018Sergei Trofimovich2016-11-063-1/+49
* global: Drop dead implementations from PYTHON_COMPATMichał Górny2016-11-014-4/+4
* Revert "Temporarily remove Manifest files that were at risk of having broken ...Michael Palimaka2016-10-311-0/+6
* Temporarily remove Manifest files that were at risk of having broken ChangeLo...Michael Palimaka2016-10-311-6/+0
* sci-biology/rebase: Bump to latest DBJustin Lecher2016-10-292-0/+47
* sci-biology/hmmer: Properly SLOT=2 hmmer-2.3.2David Seifert2016-10-093-0/+205
* sci-biology/hmmer: Version bump to 3.1_beta2David Seifert2016-10-094-0/+470
* sci-biology/tophat: Do not wrap scriptsDavid Seifert2016-10-031-2/+2
* sci-biology/samtools: Use 'python-single-r1' instead of 'python-r1'David Seifert2016-10-031-17/+21
* sci-biology/consed: Remove old ebuildsDavid Seifert2016-10-033-165/+0
* sci-biology/consed: Version bump to 29David Seifert2016-10-036-0/+1662
* sci-biology/phrap: Revbump to EAPI=6David Seifert2016-10-033-6/+112
* sci-biology/phred: Revbump to EAPI=6David Seifert2016-10-035-41/+170
* sci-biology/tophat: Remove old and ancient 1.0 ebuildsDavid Seifert2016-09-272-39/+0
* sci-biology/rebase: amd64 stable wrt bug #590146Agostino Sarubbo2016-09-261-1/+1
* sci-biology/biopython: amd64 stable wrt bug #584210Agostino Sarubbo2016-09-261-1/+1
* sci-biology/treeviewx: amd64 stable wrt bug #584034Agostino Sarubbo2016-09-261-1/+1
* sci-biology/tophat: USE="threads" dep on dev-libs/boostDavid Seifert2016-09-252-8/+61
* sci-biology/vcftools: Add missing RDEPEND on sys-libs/zlibDavid Seifert2016-09-251-1/+2
* sci-biology/vcftools: Remove old ebuildDavid Seifert2016-09-253-99/+0
* sci-biology/vcftools: Version bump to 0.1.14David Seifert2016-09-253-0/+90
* sci-biology/bedtools: Add missing RDEPEND on sys-libs/zlibDavid Seifert2016-09-251-0/+1
* sci-biology/bedtools: Remove old ebuildsDavid Seifert2016-09-253-68/+0
* sci-biology/bedtools: Version bump to 2.26.0David Seifert2016-09-253-0/+912
* sci-biology/amos: Allow for compiling with GCC 6David Seifert2016-09-244-37/+185
* sci-biology/eugene: Bump to 4.1d from science-overlayDavid Seifert2016-09-244-0/+144
* sci-biology/iqpnni: Remove old ebuildsDavid Seifert2016-09-243-61/+0
* sci-biology/iqpnni: Port to EAPI=6David Seifert2016-09-241-0/+31
* sci-biology/iqpnni: Fix CRLF line endings in patchDavid Seifert2016-09-241-24/+24
* sci-biology/clustal-omega: Version bump, allow for compiling with GCC 6David Seifert2016-09-223-3/+36
* sci-biology/tophat: Allow for compiling with GCC 6David Seifert2016-09-222-0/+15
* sci-biology/iqpnni: fix cpp14 compilation; bug #594332Kacper Kołodziej2016-09-202-0/+54
* sci-biology/prank: Remove old ebuildsDavid Seifert2016-09-204-89/+0
* sci-biology/prank: Allow for compiling with GCC 6David Seifert2016-09-202-3/+19
* sci-biology/abyss: pin boost subslot, noticed by SoapSergei Trofimovich2016-09-181-1/+1
* sci-biology/bowtie: Allow for compiling with GCC 6David Seifert2016-09-192-1/+31
* sci-biology/abyss: bump up to 1.9.0, tweak for gcc-6, bug #594254Sergei Trofimovich2016-09-184-0/+106
* sci-biology/lagan: Remove old ebuildsDavid Seifert2016-09-182-105/+0
* sci-biology/lagan: Allow for compiling with GCC 6David Seifert2016-09-183-0/+641
* sci-biology/rebase: Version BumpJustin Lecher2016-09-102-0/+47
* sci-biology/mosaik: Version bump to 2.2.30David Seifert2016-09-045-0/+374
* sci-biology/mafft: Version bump to 7.305David Seifert2016-09-042-0/+70
* sci-biology/yass: remove deprecated EAPI ebuildsDavid Seifert2016-09-042-58/+0
* sci-biology/yass: Port to EAPI=6David Seifert2016-09-041-0/+33
* sci-biology/biopython: Version bumpDavid Seifert2016-09-032-0/+57
* sci-biology/bwa: Version bump to 0.7.15David Seifert2016-09-033-7/+6
* sci-biology/tophat: Various QA fixes, handle python properlyDavid Seifert2016-09-031-4/+14
* sci-biology/allpathslg: Unconditionally require OpenMP supportDavid Seifert2016-08-131-10/+17
* sci-biology/finchtv: Cleanup per bug #146900Pacho Ramos2016-08-061-4/+0
* sci-biology/fasta: Cleanup per bug #146900Pacho Ramos2016-08-061-4/+0