Moved package from sci-chemistry/msms to sci-chemistry/msms-bin, fixed installation destination, install missing scripts

Package-Manager: portage-2.2.0_alpha2/cvs/Linux x86_64

5 files changed, 88 insertions, 16 deletions

diff --git a/sci-chemistry/msms-bin/ChangeLog b/sci-chemistry/msms-bin/ChangeLog
new file mode 100644
index 000000000000..c1796b949689
--- /dev/null
+++ b/sci-chemistry/msms-bin/ChangeLog
@@ -0,0 +1,20 @@
+# ChangeLog for sci-chemistry/msms-bin
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/msms-bin/ChangeLog,v 1.1 2010/10/30 13:17:03 jlec Exp $
+
+*msms-bin-2.6.1-r1 (30 Oct 2010)
+
+  30 Oct 2010; Justin Lecher <jlec@gentoo.org> +msms-bin-2.6.1-r1.ebuild,
+  +metadata.xml:
+  Moved package from sci-chemistry/msms to sci-chemistry/msms-bin, fixed
+  installation destination, install missing scripts
+
+  23 Aug 2010; Diego E. Pettenò <flameeyes@gentoo.org> msms-2.6.1.ebuild:
+  Fix nofetch message. REMOVE QA-BREAKING binchecks RESTRICTION.
+
+*msms-2.6.1 (21 Aug 2010)
+
+  21 Aug 2010; Alexey Shvetsov <alexxy@gentoo.org> +msms-2.6.1.ebuild,
+  +metadata.xml:
+  Initial import per bug #209161
+
diff --git a/sci-chemistry/msms-bin/Manifest b/sci-chemistry/msms-bin/Manifest
new file mode 100644
index 000000000000..996d401f0d8b
--- /dev/null
+++ b/sci-chemistry/msms-bin/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST msms_i86Linux2_2.6.1.tar.gz 112762 RMD160 5bbf6102471026112e4f688f56f0a6b8730124c9 SHA1 6ee76d87f3ac3ae543a15d2ea9f86bf3f67d5d4c SHA256 ab4f9e60df6fe18a5ac05550bf074b287792638a818a047697ead049d8737caf
+DIST msms_i86_64Linux2_2.6.1.tar.gz 593147 RMD160 a239db5e85afc445c32a165f4086d186010ab123 SHA1 39f9aa955016927138c4014ec0bb40c6a8df18a2 SHA256 5f0ca50360b5938e74c538e0399d582abc4a40ef4cf410e66f31a1f91e6e3e1f
+EBUILD msms-bin-2.6.1-r1.ebuild 985 RMD160 1b7b2ce257277105c5deab0a34ff5867eb1bb9ea SHA1 1fd6cb7fd52268aa49f463aa857cf0389fd03f8d SHA256 5932dc9b4107183510ee0501bd3d7eff45c51776c14435124ed5a70e5a695733
+MISC ChangeLog 756 RMD160 86f9ce4337351414edd1eb8d29ebe61fb66d489d SHA1 8d2f1b1297ca753b692b4942a7a44b39016d0b6e SHA256 b96ef009f04f0761ddaf81d9fb4958987232a8f6d3fb54be2a616d32a7ec0778
+MISC metadata.xml 228 RMD160 d6367c9410169dfede4a3640919b5f6a0cc00c10 SHA1 f401c065c64d42579066d5b9869532b0bf0915f0 SHA256 a960d2e1ec4dcd6b6743df4dd2ae76d2c7a968d7ef4ed44727f44a66d515ce73
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.16 (GNU/Linux)
+
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+21UAoMJ7VSYEE7hE0aoZgt2Y8cDyJUE1
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diff --git a/sci-chemistry/msms-bin/metadata.xml b/sci-chemistry/msms-bin/metadata.xml
new file mode 100644
index 000000000000..51ae060ed56e
--- /dev/null
+++ b/sci-chemistry/msms-bin/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<maintainer>
+  <email>alexxy@gentoo.org</email>
+</maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild b/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild
new file mode 100644
index 000000000000..c173fef63203
--- /dev/null
+++ b/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild,v 1.1 2010/10/30 13:17:03 jlec Exp $
+
+EAPI=3
+
+DESCRIPTION="MSMS allows to compute very efficiently triangulations of Solvent Excluded Surfaces"
+HOMEPAGE="http://mgl.scripps.edu/people/sanner/html/msms_home.html"
+SRC_URI="
+			amd64? ( msms_i86_64Linux2_2.6.1.tar.gz )
+			x86? ( msms_i86Linux2_2.6.1.tar.gz )
+"
+
+LICENSE="MSMS"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RESTRICT="fetch"
+
+S="${WORKDIR}"
+
+QA_DT_HASH="${EROOT#/}opt/bin"
+
+pkg_nofetch() {
+	einfo "Please download ${A} from ${HOMEPAGE} and place it to ${DISTDIR}"
+}
+
+src_install() {
+	doman msms.1 || die
+	dodoc README msms.html ReleaseNotes || die
+	exeinto /opt/bin
+	if use amd64; then
+		newexe ${PN%-bin}.x86_64Linux2.${PV} msms || die
+	elif use x86; then
+		newexe ${PN%-bin}.i86Linux2.${PV} msms || die
+	fi
+	dobin pdb_to_xyz* || die
+}
diff --git a/sci-chemistry/vmd/Manifest b/sci-chemistry/vmd/Manifest
index 039884748768..fd923408188a 100644
--- a/sci-chemistry/vmd/Manifest
+++ b/sci-chemistry/vmd/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA1
 
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 AUX vmd-1.8.7-respect-flags.patch 954 RMD160 1b4162173e8856801a9d37faf527d870ccc0a5a1 SHA1 7684b9c95cd87f4033aff6713a25841e31216eb9 SHA256 fbd8d610550673e58d336fcc9b780248241f78a9a418230f877972a480aac9b4
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 DIST vmd-1.8.7.src.tar.gz 23853864 RMD160 1c4751552d7b3f376f91a4b28ee9d4a028ded01a SHA1 409b6f8959d551f581991073f98885b47c21c25c SHA256 72fe2fb7eff4c805a886ea929c7e143a3a1be57cc817b5d1719d29e591d80316
 EBUILD vmd-1.8.7-r1.ebuild 5287 RMD160 7011f3f6a7b5e939c96c17e723358cd76356e776 SHA1 a6ad3d7331456cae5ed9d48f497039d86ccdb0de SHA256 fad38ad6ac0f56c6bf4b6e9502f7265f22cf73acb13189eaef35d6c2ffc4b483
-EBUILD vmd-1.8.7-r2.ebuild 5640 RMD160 4967fd7f677703dc3ed90754891e0d6ac262ce6b SHA1 49664a01204d6c1fce76df1b9760c48a454b8ffb SHA256 67796501ab676a5c330a8c3023ae21005bd51151366f3ee9cfef8294550c2cb4
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+EBUILD vmd-1.8.7-r2.ebuild 5642 RMD160 520edaa42d0d125155cb15c205cf9262469131a2 SHA1 3a8a14d935f43be250d625875b8d49a655024162 SHA256 9b095854b0560f2d78730ba23f66740e20003d295843df45a46f7b5632333e70
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