diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-07-20 00:43:13 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-07-20 00:43:13 +0000 |
| commit | 52b79c28005cf7753241274d546d04ce634d2b4f (patch) | |
| tree | a7c6bb1ee00dee1578dd35756abd323197ca844d /dev-perl | |
| parent | Bug #375635 - Replace 'hasq' with 'has'. (diff) | |
| download | historical-52b79c28005cf7753241274d546d04ce634d2b4f.tar.gz historical-52b79c28005cf7753241274d546d04ce634d2b4f.tar.bz2 historical-52b79c28005cf7753241274d546d04ce634d2b4f.zip | |
New package, ebuild written by me, dependency of sci-biology/GBrowse
Package-Manager: portage-2.2.0_alpha45/cvs/Linux x86_64
Diffstat (limited to 'dev-perl')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild | 31 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 10 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/Manifest | 14 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/metadata.xml | 13 |
4 files changed, 68 insertions, 0 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild new file mode 100644 index 000000000000..44499cf50933 --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild,v 1.1 2011/07/20 00:43:13 weaver Exp $ + +EAPI=4 + +MODULE_AUTHOR="LDS" +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="sci-biology/bioperl + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build + sci-biology/samtools" +RDEPEND="${DEPEND}" + +SRC_TEST=do + +src_prepare() { + sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die + sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog new file mode 100644 index 000000000000..35caf5caf1c7 --- /dev/null +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for dev-perl/Bio-SamTools +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.1 2011/07/20 00:43:13 weaver Exp $ + +*Bio-SamTools-1.29 (20 Jul 2011) + + 20 Jul 2011; Andrey Kislyuk <weaver@gentoo.org> +Bio-SamTools-1.29.ebuild, + +metadata.xml: + New package, ebuild written by me, dependency of sci-biology/GBrowse + diff --git a/dev-perl/Bio-SamTools/Manifest b/dev-perl/Bio-SamTools/Manifest new file mode 100644 index 000000000000..b790e1250b39 --- /dev/null +++ b/dev-perl/Bio-SamTools/Manifest @@ -0,0 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +DIST Bio-SamTools-1.29.tar.gz 331127 RMD160 e86b51bdd7ffdfd42076da11b19ab4cbb3a9a93a SHA1 2925e95fc77d70d1bd5dedb3e1f4d7f00b8facd6 SHA256 9f9a6ea320b581a4bc4f61372f17310d063b3c1a534fd2f756e967c44b0f4c06 +EBUILD Bio-SamTools-1.29.ebuild 895 RMD160 373b65789b62760e624529da1f52ab02c67627e4 SHA1 dc603c98930112016ee7ef8f0dcfc289fed1eb1d SHA256 e501a24d8b8a1056c5f2a234b58d3fbbc1faa408437bf020212b7f96276933dc +MISC ChangeLog 415 RMD160 834736b1ac7cebb2dedcf7e8ebb0175ae02d1030 SHA1 b5047a30c4e3fe744d377cabd303a831662094a8 SHA256 72777ddd2bbb47f9ff8b03b37119e5dbccd8fbd057e292c314feb53f35d49743 +MISC metadata.xml 357 RMD160 e313d1508f6c44d5532a952747d3ae64befb02d2 SHA1 d68a1814a6a44128c2059bc2504016ccbcecc6c8 SHA256 fd532c6a6e666788525911cf731239741f3bea9e22995e89d49b86c59a29a056 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v1.4.11 (GNU/Linux) + +iEYEARECAAYFAk4mJKcACgkQ8xSwyhbn2OadSACgpoN1dR53DekjQsndcdUfCDyD +S6kAoKAGQXw5sPgKFH+eA4uE4wm4vcRO +=atn/ +-----END PGP SIGNATURE----- diff --git a/dev-perl/Bio-SamTools/metadata.xml b/dev-perl/Bio-SamTools/metadata.xml new file mode 100644 index 000000000000..b0bab53dd025 --- /dev/null +++ b/dev-perl/Bio-SamTools/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci</herd> + <herd>perl</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <upstream> + <remote-id type="cpan">Bio-SamTools</remote-id> + </upstream> +</pkgmetadata> |