diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-27 20:25:54 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-27 20:25:54 +0000 |
| commit | 0f62e7d489a5373a75e5e21c0d2485d255adcc3d (patch) | |
| tree | 81c3b846a1e2ac17e505d0e6c0a92880216fb402 /sci-biology/bowtie | |
| parent | Add missing flex dependency. (diff) | |
| download | historical-0f62e7d489a5373a75e5e21c0d2485d255adcc3d.tar.gz historical-0f62e7d489a5373a75e5e21c0d2485d255adcc3d.tar.bz2 historical-0f62e7d489a5373a75e5e21c0d2485d255adcc3d.zip | |
Version bump
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.10.1.ebuild | 30 |
3 files changed, 39 insertions, 2 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index b2af845d92c5..be4ceaa24114 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bowtie # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.4 2009/06/21 15:15:43 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.5 2009/07/27 20:25:54 weaver Exp $ + +*bowtie-0.10.1 (27 Jul 2009) + + 27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +bowtie-0.10.1.ebuild: + Version bump *bowtie-0.10.0 (21 Jun 2009) diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index d84a2e51c943..04ab030a346c 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,6 +1,8 @@ DIST bowtie-0.10.0-src.zip 10255341 RMD160 33218e30da716cf358ca0df68e5dfedb16948e91 SHA1 2d9f0e2a9b2ff8db0798a35564e11fbf69479bcd SHA256 48eb4f5ed98f344ebd2739cbdef77b9747abb2b5bf290781ddb853471c0b72cf +DIST bowtie-0.10.1-src.zip 10258866 RMD160 99628de52fda58ee358f1ac629634210be24cf3e SHA1 f509f442d824a7b2b0650f29d2b3625aea1a1466 SHA256 71a64c08eee4147f670d52a8e9f61d28d9c67fa595ece93d55d9524e15fed809 DIST bowtie-0.9.9.2-src.zip 10234128 RMD160 ad728d8f23742ece2d9d2bfe708b76cdcabf32b0 SHA1 f1d2afd5391d08f7481fe0eb5f38e9d3878e9598 SHA256 c002647a0412ed736cfbd879b3a3194286d2973c6e3e32b2f7d749bebbd96228 EBUILD bowtie-0.10.0.ebuild 861 RMD160 cd67e587879e0f019d5b3a74b15c365aebc4eaed SHA1 bf86360991819d2bebbe89d0bbefc01b3e13a30d SHA256 1ccb7b06831dd21d88325ca4d527d5e0848e6453130db4cbdeced5db00c3bfe9 +EBUILD bowtie-0.10.1.ebuild 861 RMD160 7b0d689a3388463e56b345060aa38c8bf489d218 SHA1 b637c90c0456d644c2e267d5255c0d4d7d720ed7 SHA256 90a0c3fa0cc001d23ee497b8b5cbd1b2c69569f2c87511774308aad016a2ee45 EBUILD bowtie-0.9.9.2.ebuild 803 RMD160 02b3cc8d5fc424b1ab859ca3b5556f59c09cbfa4 SHA1 5a910d97e8112e54ed8bb52346f3834498c22b7d SHA256 837f262ce03aeda12bf4a63d833fde9ce2e43eb633c9fd58ab3835c38467690b -MISC ChangeLog 842 RMD160 60b7d6895b51935edb1fd888e0430c778b6d5ca6 SHA1 2d4a61b991d35525ecd7055995c1126fe8efec23 SHA256 e570f5d5be8cb287d7582dc85cb5b140d4475ff051cf7d4a619b737fab838adc +MISC ChangeLog 961 RMD160 c2b6ee8352f34d5dc37a91ecc26b7f4285860001 SHA1 d954a6e2bf2bca7706f7a1ff4ebec65f251ce56f SHA256 34e81bc1a18a8e9798489e3460c0a9fe3104d069f9ed12990017ad1b21357475 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/bowtie/bowtie-0.10.1.ebuild b/sci-biology/bowtie/bowtie-0.10.1.ebuild new file mode 100644 index 000000000000..80d3c5abfc98 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.10.1.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.10.1.ebuild,v 1.1 2009/07/27 20:25:54 weaver Exp $ + +EAPI="2" + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS + +src_prepare() { + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |