sci-biology/emboss: Drop old

Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64

3 files changed, 11 insertions, 128 deletions

diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index fcf6d0203801..fd0dd9332695 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/emboss
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.66 2011/10/20 08:46:56 xarthisius Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.67 2012/04/26 16:35:43 jlec Exp $
+
+  26 Apr 2012; Justin Lecher <jlec@gentoo.org> -emboss-6.1.0.ebuild:
+  Drop old
 
   20 Oct 2011; Kacper Kowalik <xarthisius@gentoo.org> emboss-6.3.1_p4.ebuild,
   emboss-6.1.0.ebuild, emboss-6.1.0-r1.ebuild, emboss-6.0.1.ebuild:
diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
index 42f2978f8781..d3e3eb0b0d10 100644
--- a/sci-biology/emboss/Manifest
+++ b/sci-biology/emboss/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX 22emboss 110 RMD160 aa416dbfca66cc7822ed162122addadde2756c66 SHA1 c77b477bfdf0e77de4f29794e4fb2e7592557e48 SHA256 cf3bd3b8d2638a0cd14e57839033d63c855114a0e12883bbc7a5106b0cfc01ad
 AUX 6.3.1_p4-unbundle-libs.patch 18988 RMD160 0ecaec78052d8c302717113f4883316db84ba49c SHA1 8d10d947492eea2f338313f3e4c8faabfac747c7 SHA256 1f6170a8f4182792d145fd21b6b23d817ea9f5ea39ba77721947ae67a6b6927d
@@ -13,24 +13,13 @@ DIST EMBOSS-6.3.1.tar.gz 23572243 RMD160 5c1e7b82e50a183d6ccb323f6a619f10efb0da1
 DIST emboss-6.3.1_p4.patch.gz 4070 RMD160 cdfc45a39d33a78453a3f7a18913e18862b2d117 SHA1 5ce862eeaf5be628d64d44179aa37102faf53c85 SHA256 61d1b62e3148541d496103711db6526ba76488a0899af2c98264b03bf8d6e24c
 EBUILD emboss-6.0.1.ebuild 3464 RMD160 f0d8ced9b74f87a1b08a74a2831fa0f3afbd43be SHA1 85aa60a48aaf22b65b7ce22cfdf4ab3d4c0126da SHA256 07d3de4ae0a90d0603ad922d7ca6f5a6ecf702980c9ae10ae1b1cb62faac1fc2
 EBUILD emboss-6.1.0-r1.ebuild 3699 RMD160 b8b2eb34b74a6ba0e01666e739bc53a7c165637a SHA1 c9b35848340e145bc5a5c845ad2cd5f407543221 SHA256 033af6abb3945862fd2d925435287a70a1b446e370cb5d1d38dc4913fc713517
-EBUILD emboss-6.1.0.ebuild 3569 RMD160 f739938398d745a0844ce86aa5252d57f1501fbe SHA1 ca217c86039d974d1337da19df05ec6368da1741 SHA256 976b756f21b1d2705a49141cec0665bc95f4e9c00607a08f91a336f4aa8b4261
 EBUILD emboss-6.3.1_p4.ebuild 3517 RMD160 ffe651e3ad7c3ffc3773e3c70c9051bbeef8307a SHA1 76a701111f69bd1531da0e2d2b23c2c7940aef6f SHA256 23c6b2823dc03d96699776293c045dc095e577bea903bb431de63bf800722dd5
-MISC ChangeLog 11437 RMD160 412b44ad23bdab39a594758bd1c34579359ea792 SHA1 c1fe1900d327cb0bf90d9bc4ee79239fd52d8573 SHA256 8f551621132987c582810c7b083730bc5ff9c16aaee03d6704acc4a9d539cca6
+MISC ChangeLog 11512 RMD160 303396a7a178deae2395f031fde98913b6e67681 SHA1 f35834b66fc603c44f701cbf97565bb06bfa0280 SHA256 610658e75205b2e7bfbaefb3ff0328e8b7b0db0f6a91af69a38992491b3b14af
 MISC metadata.xml 924 RMD160 0012a7f8446b6e3ade6b18e2b015bfb80c546712 SHA1 3d47f955e2c7e10fe71ba427c19cc51000990caf SHA256 9a25a29f9ad98792903c439ad7dd4ec485e44e60e23beaf1fa4c209ea89be49b
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.18 (GNU/Linux)
+Version: GnuPG v2.0.19 (GNU/Linux)
 
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diff --git a/sci-biology/emboss/emboss-6.1.0.ebuild b/sci-biology/emboss/emboss-6.1.0.ebuild
deleted file mode 100644
index 012f5c43628a..000000000000
--- a/sci-biology/emboss/emboss-6.1.0.ebuild
+++ /dev/null
@@ -1,109 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-6.1.0.ebuild,v 1.7 2011/10/20 08:46:56 xarthisius Exp $
-
-inherit eutils
-
-DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
-HOMEPAGE="http://emboss.sourceforge.net/"
-SRC_URI="ftp://${PN}.open-bio.org/pub/EMBOSS/old/${PV}/EMBOSS-${PV}.tar.gz"
-LICENSE="GPL-2 LGPL-2"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE="X png minimal"
-
-DEPEND="X? ( x11-libs/libXt )
-	png? (
-		sys-libs/zlib
-		media-libs/libpng
-		media-libs/gd
-	)
-	!minimal? (
-		sci-biology/primer3
-		sci-biology/clustalw
-	)"
-
-RDEPEND="${DEPEND}
-	!sys-devel/cons"
-
-PDEPEND="!minimal? (
-		sci-biology/aaindex
-		sci-biology/cutg
-		sci-biology/prints
-		sci-biology/prosite
-		>=sci-biology/rebase-707
-		sci-biology/transfac
-	)"
-
-S="${WORKDIR}/EMBOSS-${PV}"
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-	epatch "${FILESDIR}"/${PN}-5.0.0-as-needed.patch
-
-	local link_string="-lX11";
-	if use png; then
-		link_string="${link_string} -lgd -lpng"
-	fi
-	sed -e "s:PATCH_PLPLOT:${link_string}:" -i plplot/Makefile.in \
-		|| die "Failed to patch ajax Makefile"
-}
-
-src_compile() {
-	EXTRA_CONF="--includedir=${D}/usr/include/emboss"
-	! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
-	! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
-
-	econf ${EXTRA_CONF} || die
-	# Do not install the JEMBOSS component (the --without-java configure option
-	# does not work). JEMBOSS will eventually be available as a separate package.
-	sed -i -e "s/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/" \
-			Makefile || die
-	emake || die
-}
-
-src_install() {
-	einstall || die "Failed to install program files."
-
-	dodoc AUTHORS ChangeLog FAQ NEWS README THANKS \
-			|| die "Failed to install documentation."
-	newdoc "${FILESDIR}"/${PN}-README.Gentoo-1 README.Gentoo \
-			|| die "Failed to install Gentoo readme file."
-
-	# Install env file for setting libplplot and acd files path.
-	cat <<- EOF > 22emboss
-		# plplot libs dir
-		PLPLOT_LIB="/usr/share/EMBOSS/"
-		# ACD files location
-		EMBOSS_ACDROOT="/usr/share/EMBOSS/acd"
-	EOF
-	doenvd 22emboss || die "Failed to install environment file."
-
-	# Symlink preinstalled docs to "/usr/share/doc".
-	dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals || die
-	dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs || die
-	dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials || die
-	dosym /usr/share/EMBOSS/doc/html /usr/share/doc/${PF}/html || die
-
-	# Remove frestdist documentation conflicting with the EMBASSY philypnew
-	# package.
-	rm "${D}"/usr/share/EMBOSS/doc/programs/text/frestdist.txt || \
-			die "Failed to remove duplicated documentation."
-
-	# Remove useless dummy files from the image.
-	find emboss/data -name dummyfile -delete || die "Failed to remove dummy files."
-
-	# Move the provided codon files to a different directory. This will avoid
-	# user confusion and file collisions on case-insensitive file systems (see
-	# bug #115446). This change is documented in "README.Gentoo".
-	mv "${D}"/usr/share/EMBOSS/data/CODONS{,.orig} || \
-			die "Failed to move CODON directory."
-
-	# Move the provided restriction enzyme prototypes file to a different name.
-	# This avoids file collisions with versions of rebase that install their
-	# own enzyme prototypes file (see bug #118832).
-	mv "${D}"/usr/share/EMBOSS/data/embossre.equ{,.orig} || \
-			die "Failed to move enzyme equivalence file."
-}