diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-04-11 17:29:40 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-04-11 17:29:40 +0000 |
| commit | 07c699727b3350b129b95a17824a2d91f4046e06 (patch) | |
| tree | 734c7431073e230ad9785d651446b38cdef12b0a /sci-biology/mosaik | |
| parent | x86 stable wrt bug #309949 (diff) | |
| download | historical-07c699727b3350b129b95a17824a2d91f4046e06.tar.gz historical-07c699727b3350b129b95a17824a2d91f4046e06.tar.bz2 historical-07c699727b3350b129b95a17824a2d91f4046e06.zip | |
Version bump, address bug 314659
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/mosaik')
| -rw-r--r-- | sci-biology/mosaik/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/mosaik/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/mosaik/mosaik-1.0.1388.ebuild | 38 |
3 files changed, 47 insertions, 12 deletions
diff --git a/sci-biology/mosaik/ChangeLog b/sci-biology/mosaik/ChangeLog index 37b470252215..9613d2257c8e 100644 --- a/sci-biology/mosaik/ChangeLog +++ b/sci-biology/mosaik/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/mosaik # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mosaik/ChangeLog,v 1.3 2010/01/03 14:25:26 pacho Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mosaik/ChangeLog,v 1.4 2010/04/11 17:29:40 weaver Exp $ + +*mosaik-1.0.1388 (11 Apr 2010) + + 11 Apr 2010; Andrey Kislyuk <weaver@gentoo.org> +mosaik-1.0.1388.ebuild: + Version bump, address bug 314659 03 Jan 2010; Pacho Ramos <pacho@gentoo.org> mosaik-1.0.1367.ebuild: amd64 stable, bug 298766 diff --git a/sci-biology/mosaik/Manifest b/sci-biology/mosaik/Manifest index e9a63bf39e30..408004cbd473 100644 --- a/sci-biology/mosaik/Manifest +++ b/sci-biology/mosaik/Manifest @@ -1,14 +1,6 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - DIST Mosaik-1.0.1367-source.tar.bz2 8700231 RMD160 f533d05e71d9bea773efd90548756f88366b214c SHA1 6e33533861965b29c5cf80c1d5f1b1742924a6d7 SHA256 2a6ee1d25af835028b71f2518c6a00e929e64e7be6305183dfe0e242a015c750 +DIST Mosaik-1.0.1388-source.tar.bz2 8730164 RMD160 f4effb98f4e5aabb1d2e94474c04e36bb395e71c SHA1 aec9ef4a2e7e7ae349157f2ddf240ae5e981d820 SHA256 d6a8effa49adac617a388e2132aaf1a6b0679c783574d7df2cbd952a5f96e60c EBUILD mosaik-1.0.1367.ebuild 805 RMD160 0f63cb70baafc83ca7ea4ff771528a40a260a241 SHA1 b9b6135932270c794fb8e517b92a39dd899d26af SHA256 ee59e8e16bd9336fed2acedfcd76e33665435cbb789f00c4ec86bc04bf7037d0 -MISC ChangeLog 574 RMD160 8a6319b8524fcee225ebb178e92e31ea61063644 SHA1 7c27f4e7f7bf5fb5e4a32bdd98fcc6429b1e1598 SHA256 453cb73f965e34e03f7f71d7c91c6b3c42ba6711be3aa0414ac2befd3f15d33b +EBUILD mosaik-1.0.1388.ebuild 881 RMD160 c452a020f0c6bb809d04fb42120322b53ed9613d SHA1 cc347b5a440a0db8c42e684f7d150a561f5157c5 SHA256 1a65790e3f9a42e6ada77a251b280d821823cfb5dd7fbff3ec558a83ae1211c0 +MISC ChangeLog 718 RMD160 fd4fffe1fc24867ea6867b9cf9993be125d3ebcb SHA1 b6270ec483f985fe7351600d6e011e6c33c20b94 SHA256 d9a8669b1704982531f674037b3b122c8dd3eee93a6cc470b594b422c4e66bc4 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAktAqNwACgkQCaWpQKGI+9RXJwCeMXHJd2byZ73SqRBgGNJpWDQ/ -spAAniff4jbfblg9es4NxbUOA3crEL03 -=yib/ ------END PGP SIGNATURE----- diff --git a/sci-biology/mosaik/mosaik-1.0.1388.ebuild b/sci-biology/mosaik/mosaik-1.0.1388.ebuild new file mode 100644 index 000000000000..e08292a3f319 --- /dev/null +++ b/sci-biology/mosaik/mosaik-1.0.1388.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mosaik/mosaik-1.0.1388.ebuild,v 1.1 2010/04/11 17:29:40 weaver Exp $ + +EAPI="2" + +DESCRIPTION="A reference-guided aligner for next-generation sequencing technologies" +HOMEPAGE="http://code.google.com/p/mosaik-aligner/" +SRC_URI="http://mosaik-aligner.googlecode.com/files/Mosaik-${PV}-source.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/mosaik-aligner" + +src_prepare() { + sed -i 's/-static//' src/includes/linux.inc || die +} + +src_compile() { + emake -C src || die +# emake -C MosaikTools/c++ || die +# emake -C MosaikTools/perl || die +} + +src_install() { + dobin bin/* || die + + insinto /usr/share/${PN} + doins -r MosaikTools || die + + dodoc README Mosaik-1.0-Documentation.pdf +} |