New version.

Package-Manager: portage-2.0.51.19

4 files changed, 65 insertions, 2 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index c8a908e8572a..ffdad293981d 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.1 2005/03/03 18:41:31 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.2 2005/03/30 21:11:46 ribosome Exp $
+
+*t-coffee-2.26 (30 Mar 2005)
+
+  30 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +t-coffee-2.26.ebuild:
+  New version.
 
 *t-coffee-2.03 (03 Mar 2005)
 
diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest
index d1640782d1a9..aaf320336a77 100644
--- a/sci-biology/t-coffee/Manifest
+++ b/sci-biology/t-coffee/Manifest
@@ -1,4 +1,6 @@
+MD5 c3d7c94c9fdb0576cb3206675970fab6 t-coffee-2.26.ebuild 1352
 MD5 ba7eb142bfd24a0004f65c04bae8025e t-coffee-2.03.ebuild 1516
-MD5 72c8c9734d7d1d9d59c1be0f97d1d759 ChangeLog 357
+MD5 51df6a84755ba0b96a800abe6b8a40d9 ChangeLog 479
 MD5 0bbfd32ca9864625c55ab6460dbbd963 metadata.xml 755
 MD5 733ccc786341ddaabbed48391bcdb961 files/digest-t-coffee-2.03 86
+MD5 746d3921012d17495ab81da3878a076d files/digest-t-coffee-2.26 86
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-2.26 b/sci-biology/t-coffee/files/digest-t-coffee-2.26
new file mode 100644
index 000000000000..84315b952543
--- /dev/null
+++ b/sci-biology/t-coffee/files/digest-t-coffee-2.26
@@ -0,0 +1 @@
+MD5 7e345f8410d921075492dd9853331e44 T-COFFEE_distribution_Version_2.26.tar.gz 901469
diff --git a/sci-biology/t-coffee/t-coffee-2.26.ebuild b/sci-biology/t-coffee/t-coffee-2.26.ebuild
new file mode 100644
index 000000000000..27d2c81e8a00
--- /dev/null
+++ b/sci-biology/t-coffee/t-coffee-2.26.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-2.26.ebuild,v 1.1 2005/03/30 21:11:46 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="A multiple sequence alignment package"
+HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
+SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
+LICENSE="t-coffee"
+
+RESTRICT="nomirror"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86"
+
+DEPEND="sci-biology/clustalw"
+
+TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
+S=${TCDIR}/t_coffee_source
+
+src_unpack(){
+	unpack ${A}
+	cd ${S}
+	sed -i -e "s/CC	= cc/CC	= $(tc-getCC) ${CFLAGS}/" makefile || die || die
+	cd ${TCDIR}/bin
+	sed -i -e 's%chdir "./example/test";%chdir "../example/test";%' test.pl || die
+
+}
+
+src_compile() {
+	make all || die
+}
+
+src_install() {
+	cd ${TCDIR}/bin
+	dobin t_coffee
+	insinto /usr/share/${PN}/lib
+	doins ${TCDIR}/html
+
+	dodoc ${TCDIR}/doc/README4T-COFFEE
+	insinto /usr/share/doc/${PF}
+	doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf}
+
+	insinto /usr/share/${PN}/example/seq
+	doins ${TCDIR}/example/seq/*
+	insinto /usr/share/${PN}/example/test
+	doins ${TCDIR}/example/test/*.{aln,pep}
+}
+
+src_test() {
+	cd ${TCDIR}/bin
+	./test.pl || die
+}