Respect CC,LDFLAGS wrt bug 335952. Thanks to Diego for the report and Ross Smith <gaurdro@gmail.com> for the patch.

Package-Manager: portage-2.1.8.3/cvs/Linux x86_64

3 files changed, 55 insertions, 3 deletions

diff --git a/sci-biology/kalign/ChangeLog b/sci-biology/kalign/ChangeLog
index 2b33062206b7..97acf338966d 100644
--- a/sci-biology/kalign/ChangeLog
+++ b/sci-biology/kalign/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/kalign
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/ChangeLog,v 1.3 2009/03/21 17:10:35 armin76 Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/ChangeLog,v 1.4 2010/09/04 18:16:18 xarthisius Exp $
+
+*kalign-2.03-r1 (04 Sep 2010)
+
+  04 Sep 2010; Kacper Kowalik <xarthisius@gentoo.org>
+  +kalign-2.03-r1.ebuild:
+  Respect CC,LDFLAGS wrt bug 335952. Thanks to Diego for the report and Ross
+  Smith <gaurdro@gmail.com> for the patch.
 
   21 Mar 2009; Raúl Porcel <armin76@gentoo.org> kalign-2.03.ebuild:
   x86 stable, bug #263043
diff --git a/sci-biology/kalign/Manifest b/sci-biology/kalign/Manifest
index da2929ebef7c..cef92eba4098 100644
--- a/sci-biology/kalign/Manifest
+++ b/sci-biology/kalign/Manifest
@@ -1,4 +1,17 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 DIST kalign_2.03.orig.tar.gz 114022 RMD160 e4677db9983b4bf567515c535dbd1f61cfdd70bd SHA1 c856d14b537a9139fc601e4de98870293a3aceb4 SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0
+EBUILD kalign-2.03-r1.ebuild 729 RMD160 6c6ce2868df4b6720aa4f1bb5e88f168727eb7e3 SHA1 575d305b155bd72b7f85cd55120e948cb6e91c42 SHA256 09652e424ec7849ebf6c570a4b1f9f7c1d3aea90fd2217160320e2f5199fcd24
 EBUILD kalign-2.03.ebuild 636 RMD160 225096c1b7ad977327feefcaf5c8766b88d1ae9d SHA1 23b144d9b4a0ba9d9c3af17d07da5a59b8cf803c SHA256 84e66b80a479846ce3de291b415c15e0ccfc42e9dd653832bd562158d1c7458e
-MISC ChangeLog 541 RMD160 ad62b7f4c8c8ebe4d6e9a20b549182dcd50edd18 SHA1 88f9dfe083882a412f7b1220419f71232b8e8689 SHA256 e373cf26b3490a91b361cf9ec8e3e0d6a0c996ecbf2fcd50b033322a669f33c8
+MISC ChangeLog 776 RMD160 7fe6fcaaa28ffafb348c999ba5eb87498f5aea3f SHA1 8c10769d872e1a9c6ffb7d37aa5afb833416b977 SHA256 d14a0fb138c0cc12efa6b595879c287792a56adf71c21b3a5513d129daa90537
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.16 (GNU/Linux)
+
+iJwEAQECAAYFAkyCjP8ACgkQIiMqcbOVdxSiWAP/XfZC/xQNBDFSIaWTfxd6osrk
+fzmAInimJOrFLiv8GQVYFDmei/X7lhNikFhi62DOyYwFlLPf+Lbi80SQpmdPF01w
+AIIOK+WUP0qYb2EkqEdyiJ4TBQ4Q7gtNNWrOry9WCBhd5iEDcngVCnnqbrnT2gLX
+AIXWJoqB3CHynM5XOsM=
+=Wprm
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/kalign/kalign-2.03-r1.ebuild b/sci-biology/kalign/kalign-2.03-r1.ebuild
new file mode 100644
index 000000000000..8cc1772b7851
--- /dev/null
+++ b/sci-biology/kalign/kalign-2.03-r1.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/kalign-2.03-r1.ebuild,v 1.1 2010/09/04 18:16:18 xarthisius Exp $
+
+EAPI=2
+
+inherit toolchain-funcs
+
+DESCRIPTION="Global and progressive multiple sequence alignment"
+HOMEPAGE="http://msa.cgb.ki.se/"
+SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+S=${WORKDIR}/${PN}
+
+src_prepare() {
+	sed -e "s/\$(CFLAGS) \$(OBJECTS)/\$(LDFLAGS) &/" \
+		-i Makefile.in || die
+}
+
+src_compile() {
+	emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" || die
+}
+
+src_install() {
+	dobin kalign || die
+	dodoc README || die
+}