Redigest for Manifest2

Package-Manager: portage-2.1.2-r10

17 files changed, 308 insertions, 138 deletions

diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest
index d67e3d3683d6..92be18922348 100644
--- a/sci-biology/bioperl-run/Manifest
+++ b/sci-biology/bioperl-run/Manifest
@@ -1,8 +1,11 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX bioperl-run-Pise-test-patch.diff 722 RMD160 85c3744bfc14db91971e4df2dfd967c5ad9f0310 SHA1 0498546ae9f12d0db5194c41a360910833870eac SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f
 MD5 21ad123058f1e670f289ee1a87de4e82 files/bioperl-run-Pise-test-patch.diff 722
 RMD160 85c3744bfc14db91971e4df2dfd967c5ad9f0310 files/bioperl-run-Pise-test-patch.diff 722
 SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f files/bioperl-run-Pise-test-patch.diff 722
-DIST bioperl-run-1.4.tar.gz 830774
+DIST bioperl-run-1.4.tar.gz 830774 RMD160 264f9826e4d92c3cac96937b73db9bcc96b9eea8 SHA1 578434800872a41631d1bf2b632f3ef0475a24a1 SHA256 54eea327c8f80061d6c45e56b64d5c51daa20b723390eed1a3377f3a61645d86
 DIST bioperl-run-1.5.1.tar.gz 864369 RMD160 841e33cffda7b787b1700a075bf985c717d7e678 SHA1 35d4ab009f7e653dd18bb636854181d68841b613 SHA256 d9e1f5bdff5541376cab1c8b7e8db9bedbbb7b6f76b965d55dc20122a98f93e8
 EBUILD bioperl-run-1.4.ebuild 1273 RMD160 c96f8714c1a4a4386706f4296572e7e8240e2989 SHA1 142de2a107e8a5020b46973c816ac69e176b2f9f SHA256 17cffd41ea3b90f8f7f4ea71b56b7c04e4f7f2a8a756e1c725d864c4dece2539
 MD5 c1afff2e58b5176d7ccaaaf82f7b030a bioperl-run-1.4.ebuild 1273
@@ -12,17 +15,24 @@ EBUILD bioperl-run-1.5.1.ebuild 1288 RMD160 c3b8b7a28ef8ca2884e77ad5c125fb12a34d
 MD5 f95d569e34019d9e903f67238882bc56 bioperl-run-1.5.1.ebuild 1288
 RMD160 c3b8b7a28ef8ca2884e77ad5c125fb12a34db0be bioperl-run-1.5.1.ebuild 1288
 SHA256 d5b066528a330c5a88f1f4c9925185a7efbe7605d27b3ca7dc46e00046943aea bioperl-run-1.5.1.ebuild 1288
-MISC ChangeLog 2642 RMD160 eb575ccb8bf6fff3eb20d148c4041ff3ba9df6ee SHA1 b8debbf3b3b3d1d0f24d0c279b8d7c523533ce37 SHA256 e83f243227aa6819fb19515e58465769ceb84d615d6167782830b941253bae7e
-MD5 69caeeec9d4b64f31484a69243720226 ChangeLog 2642
-RMD160 eb575ccb8bf6fff3eb20d148c4041ff3ba9df6ee ChangeLog 2642
-SHA256 e83f243227aa6819fb19515e58465769ceb84d615d6167782830b941253bae7e ChangeLog 2642
+MISC ChangeLog 2725 RMD160 4acc3b986eb7cfcb217f0b33648b54c7ad680169 SHA1 eddc76e34b31644dbe895d0d7496a803cc1cf37d SHA256 08a0e13ff16cba9566d49df0182f470cc2fc6c528f9c9bfc011596da5e943720
+MD5 e8205d5fd5e7337eb04ada2cbf8688a8 ChangeLog 2725
+RMD160 4acc3b986eb7cfcb217f0b33648b54c7ad680169 ChangeLog 2725
+SHA256 08a0e13ff16cba9566d49df0182f470cc2fc6c528f9c9bfc011596da5e943720 ChangeLog 2725
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
 MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 47db6a1f839dd45f8c891b5f6ab2ff2a files/digest-bioperl-run-1.4 67
-RMD160 ea531db028c33bfb9ddd97545bfb5f852010f6d2 files/digest-bioperl-run-1.4 67
-SHA256 aa030e3823bd4e0cf56adc1264604e473fec0720814b358dd08472a7c28efe0a files/digest-bioperl-run-1.4 67
+MD5 fbc7f81e498a654bbbb74e1cf6d7c6c6 files/digest-bioperl-run-1.4 247
+RMD160 361c1cf48a34e9a17c645ff95fe8d3be934e5231 files/digest-bioperl-run-1.4 247
+SHA256 3d18d4f18f98d541e9a8a9749059696426bde39d2b2d026af9f8acc53fac3ff8 files/digest-bioperl-run-1.4 247
 MD5 388741fe73c4ca46a581b02689f13a74 files/digest-bioperl-run-1.5.1 253
 RMD160 864b8a2e16d7c2032c71dd099c266e6ff049def3 files/digest-bioperl-run-1.5.1 253
 SHA256 1cead595c5b1249d6ea254820bfeeca26ca2fbab4c094304cc28f8b3f4f4b7b2 files/digest-bioperl-run-1.5.1 253
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PBcz974XjDVpbkRAs49AKCc7cKqPpUc9j363Vs0SlHKCv/DlQCgrpIu
+zaZJhQ9aOq0X8UfvcJYReyg=
+=M24t
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest
index 2f0a2573ac5b..246b24680647 100644
--- a/sci-biology/clustalw-mpi/Manifest
+++ b/sci-biology/clustalw-mpi/Manifest
@@ -1,16 +1,26 @@
-DIST clustalw-mpi-0.13.tar.gz 154911
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST clustalw-mpi-0.13.tar.gz 154911 RMD160 9da3e418efcb0cfd0c5df2705ee217b9dacc3917 SHA1 ae5026e8b4ba58bb0caa5643ea90434d9589df5a SHA256 2fcb0dc0001b034f2931153654fc66d67db360f0bf3fbcde19dc389bbe145845
 EBUILD clustalw-mpi-0.13.ebuild 1236 RMD160 f29c0539cda3118c01944cacdffad794fdfdd183 SHA1 011ddc955f19dc500d8b676c0722b7724b01f510 SHA256 369a3ba3109019a1d9ef22407164b3d3b2bd6312bc6e9ba478190844e407dcf4
 MD5 f5f4267e673ec202b82e6b063deb108f clustalw-mpi-0.13.ebuild 1236
 RMD160 f29c0539cda3118c01944cacdffad794fdfdd183 clustalw-mpi-0.13.ebuild 1236
 SHA256 369a3ba3109019a1d9ef22407164b3d3b2bd6312bc6e9ba478190844e407dcf4 clustalw-mpi-0.13.ebuild 1236
-MISC ChangeLog 720 RMD160 af1339048d66665d816c7ba039a83d33fc583912 SHA1 a5f4b1d16aeee1f1acf77655637810a7089581ff SHA256 e55e80addf5b14da644ff9d331a1d1f4885967a808f7686bbe449855c77a8401
-MD5 ab2a0b29638a225ea0e646ef151f8546 ChangeLog 720
-RMD160 af1339048d66665d816c7ba039a83d33fc583912 ChangeLog 720
-SHA256 e55e80addf5b14da644ff9d331a1d1f4885967a808f7686bbe449855c77a8401 ChangeLog 720
+MISC ChangeLog 803 RMD160 e45786140c4f964edad4de874d10f06ebfda8f23 SHA1 6f9ce6937641437eacccf303c90bf92e6910dfc8 SHA256 10275ac9d1c3cd4dfa1ed0362a091f49e3c99300c266895c0d4f38a65a411dd5
+MD5 9964c63b267a9b48cd9b24b01834d8f0 ChangeLog 803
+RMD160 e45786140c4f964edad4de874d10f06ebfda8f23 ChangeLog 803
+SHA256 10275ac9d1c3cd4dfa1ed0362a091f49e3c99300c266895c0d4f38a65a411dd5 ChangeLog 803
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
 MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 a3271acbd5ef3270f2823a55c22dc7cc files/digest-clustalw-mpi-0.13 69
-RMD160 4403f323201a1654f0409402769ae61a27dc5bbf files/digest-clustalw-mpi-0.13 69
-SHA256 573e9723d88db4015ee2b80efdd9bde357a782c76dff25d0131beb3c89460721 files/digest-clustalw-mpi-0.13 69
+MD5 86cd531ee26535e0d30f6e5fe36983c9 files/digest-clustalw-mpi-0.13 253
+RMD160 eee73c3bdccad254b5e136e28c7390bf4e185b08 files/digest-clustalw-mpi-0.13 253
+SHA256 3291348766b4589d5a2a9248152331e261050903a05fd32a6ea181fcb3f934ba files/digest-clustalw-mpi-0.13 253
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PB3z974XjDVpbkRAqmPAJ9AB/J94B+7r0kJsDdgvDkJTs8dOwCguapF
+3W0pHSh8wTqjvC7+4qiduJg=
+=BtAH
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/dialign-t/Manifest b/sci-biology/dialign-t/Manifest
index 9bf8940a12af..fdc39c81d8c4 100644
--- a/sci-biology/dialign-t/Manifest
+++ b/sci-biology/dialign-t/Manifest
@@ -1,12 +1,15 @@
-DIST DIALIGN-T_0.2.1.tar.gz 1635888 RMD160 a43807668354120b873cad0120a7691b6860ca28 SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST DIALIGN-T_0.2.1.tar.gz 1635888 RMD160 a43807668354120b873cad0120a7691b6860ca28 SHA1 5e866806738a9467e19a4e4d8659870bd1d1cb3e SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930
 EBUILD dialign-t-0.2.1.ebuild 1008 RMD160 71fb25ca449a6acd2c38dee9b2d1b1d93c2e211d SHA1 45cff5c6b28f3b36ea6334f2e53c86f2e6738640 SHA256 6f021c9b5da85508d3de01b47ff3861c04be39cab054d6658f38c1ff5b5584bc
 MD5 bb116e6119c131dc5898b6dc26a373e0 dialign-t-0.2.1.ebuild 1008
 RMD160 71fb25ca449a6acd2c38dee9b2d1b1d93c2e211d dialign-t-0.2.1.ebuild 1008
 SHA256 6f021c9b5da85508d3de01b47ff3861c04be39cab054d6658f38c1ff5b5584bc dialign-t-0.2.1.ebuild 1008
-MISC ChangeLog 789 RMD160 327a4b7a07b1178db9b48908fb36c94f6e41e603 SHA1 1f518ed12db517fd88ecae61c66686818a808c75 SHA256 2b26f9b1d551bc70458535bbd5cfec4aaeb7fd7d10855a6827c45f8249b3e3e8
-MD5 a57342f49403823d6001c659daf04530 ChangeLog 789
-RMD160 327a4b7a07b1178db9b48908fb36c94f6e41e603 ChangeLog 789
-SHA256 2b26f9b1d551bc70458535bbd5cfec4aaeb7fd7d10855a6827c45f8249b3e3e8 ChangeLog 789
+MISC ChangeLog 871 RMD160 1eeeab7e0f5c07413fe511314443024b078e8cc3 SHA1 8b39947cacf90f95f19d21cd65f00aa15a08aa6d SHA256 7f7fdd6cc35cd182fe5f13338d13f2eb092074f6d04574ab860b967f5739e9a2
+MD5 8399d4e194ff855bba61b0dbbac28827 ChangeLog 871
+RMD160 1eeeab7e0f5c07413fe511314443024b078e8cc3 ChangeLog 871
+SHA256 7f7fdd6cc35cd182fe5f13338d13f2eb092074f6d04574ab860b967f5739e9a2 ChangeLog 871
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
 MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
@@ -14,3 +17,10 @@ SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata
 MD5 20a9e61f87048ee301d0cb690b890ede files/digest-dialign-t-0.2.1 250
 RMD160 9d920eafc14c5c82bb7f59a0589570c52ce5e292 files/digest-dialign-t-0.2.1 250
 SHA256 13b80f9063a8294da8e20803cd0ab7ac56a38eb1ba5548885f52000103db8795 files/digest-dialign-t-0.2.1 250
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PCSz974XjDVpbkRAiDhAJ42ZR2P75LrV1UBX1MDgYYGteoMTwCcCqEv
+jQG9vBKPXB4P/4YvkO6fPZY=
+=pZ0Q
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/elph/Manifest b/sci-biology/elph/Manifest
index 724232e52d20..17f0178c800c 100644
--- a/sci-biology/elph/Manifest
+++ b/sci-biology/elph/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX elph-0.1.4-usage.patch 3909 RMD160 dd9e29881937b1be29c851270056ee455b1ec6e3 SHA1 42b64abe718ed2702513cd2c43083e1bfeb6d6b6 SHA256 89ed340310bb46f6d92d7f644b515e4b919dbf411a039a225e04387055b47482
 MD5 75fe098a9b1df66ed55f16b4cfde3922 files/elph-0.1.4-usage.patch 3909
 RMD160 dd9e29881937b1be29c851270056ee455b1ec6e3 files/elph-0.1.4-usage.patch 3909
@@ -6,19 +9,26 @@ AUX elph-0.1.5-usage.patch 3913 RMD160 31964a1d76753d2167c5e206d34648088e974f34
 MD5 fdc58c9dcd2752ace3fb6520676c8414 files/elph-0.1.5-usage.patch 3913
 RMD160 31964a1d76753d2167c5e206d34648088e974f34 files/elph-0.1.5-usage.patch 3913
 SHA256 78ee515e8a0ab04b279cb638c459fe1152b5f0015c9d5c9feea4f3d2a00d226a files/elph-0.1.5-usage.patch 3913
-DIST ELPH-0.1.5.tar.gz 153150
+DIST ELPH-0.1.5.tar.gz 153150 RMD160 7e60e2cf9a99cb435768cebbcd1506164e8a901c SHA1 1a3820c851ac0d021c9696ba1fd4eec819d82dbc SHA256 6ffa160f85cb2569bdf869cb0514dc624afcef4f2d8a36efbd1228d1a16cf361
 EBUILD elph-0.1.5.ebuild 1097 RMD160 d8f66d9a632a7ed9956725a8dc652eb81d3ac9b2 SHA1 da4ce2c28e4ad6866ad14dda00514679b4b98e3a SHA256 63ebe16b7a570eefd797e3c975abda63cf58e5c82af00f22c8896a119aa6b837
 MD5 3f29ac92714c7c9d82ef996aa81e9cfe elph-0.1.5.ebuild 1097
 RMD160 d8f66d9a632a7ed9956725a8dc652eb81d3ac9b2 elph-0.1.5.ebuild 1097
 SHA256 63ebe16b7a570eefd797e3c975abda63cf58e5c82af00f22c8896a119aa6b837 elph-0.1.5.ebuild 1097
-MISC ChangeLog 1676 RMD160 2df789563d45c2c27926c84fb70c2e97653aa0b6 SHA1 0ba018ac8ec4668a27533eb8a4ae9ecd564e2cc3 SHA256 d8ba281c712ae54106fb54cd4edd2e6ccbca3b2d45d9f0f658de076da1e0b9a3
-MD5 1827e77348785af20cc910f80687153d ChangeLog 1676
-RMD160 2df789563d45c2c27926c84fb70c2e97653aa0b6 ChangeLog 1676
-SHA256 d8ba281c712ae54106fb54cd4edd2e6ccbca3b2d45d9f0f658de076da1e0b9a3 ChangeLog 1676
+MISC ChangeLog 1760 RMD160 137e680f5359143a5a80e181df738a8f86b94a6b SHA1 9b8f22116cc334d0fc3913d602212e21c03f2ac9 SHA256 5cd2b70c6e199aa60adf85cdb565303ef4d4e5a60283036cb7a837185336244c
+MD5 76c9efb59a4919dcbb465c3c49a4393c ChangeLog 1760
+RMD160 137e680f5359143a5a80e181df738a8f86b94a6b ChangeLog 1760
+SHA256 5cd2b70c6e199aa60adf85cdb565303ef4d4e5a60283036cb7a837185336244c ChangeLog 1760
 MISC metadata.xml 521 RMD160 a76504e965c605b1482c130ff89a7a2699b40848 SHA1 a53e9edd330363da92d61317a9b6dff0764e7e69 SHA256 6258ca36980b98a20660267e910d4866d57ea6f499fc23f98a3cfd774db23e23
 MD5 6c406c6b044ef78b32d6eecfe0e07514 metadata.xml 521
 RMD160 a76504e965c605b1482c130ff89a7a2699b40848 metadata.xml 521
 SHA256 6258ca36980b98a20660267e910d4866d57ea6f499fc23f98a3cfd774db23e23 metadata.xml 521
-MD5 edfbe76f341ee7fc8c683b7fe0b023bd files/digest-elph-0.1.5 62
-RMD160 68bce06334b9e5c1c7092625b8b9843c055602e6 files/digest-elph-0.1.5 62
-SHA256 40f369d3feec46b4164485bed19a41380a1949cb8e7e325761897669b20988d7 files/digest-elph-0.1.5 62
+MD5 56354c1657421bcf7d27ae1deb5ad5f0 files/digest-elph-0.1.5 232
+RMD160 f8254204f481cb8f0a3ef8988ed040a407a8aa7e files/digest-elph-0.1.5 232
+SHA256 e0b26287eda0f69a1e54711b93870e87a4ddd21ae3c09959f7d24ce2ee95fdef files/digest-elph-0.1.5 232
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PC1z974XjDVpbkRAm/DAJ9HFDpk01UA5TeaJnXFmg8T2hoIxgCfQmX1
+zjkIZ1RaNNhjJdtXvIYT45c=
+=RlwA
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/gibbs/Manifest b/sci-biology/gibbs/Manifest
index 2073f69960ee..39846d6adc92 100644
--- a/sci-biology/gibbs/Manifest
+++ b/sci-biology/gibbs/Manifest
@@ -1,20 +1,30 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX gibbs-demo 313 RMD160 6c986ae90b15f400884146c4eb3bde9fd05696e9 SHA1 c615f608fd85cb409ffbdacafaa90e46c0d8a26b SHA256 018ea72b23f41bd1b5945a58c4e577fb1274484e624fc8c10f96b23bf3d827b4
 MD5 5d1c8a0323c1506ec063c702ff2013ba files/gibbs-demo 313
 RMD160 6c986ae90b15f400884146c4eb3bde9fd05696e9 files/gibbs-demo 313
 SHA256 018ea72b23f41bd1b5945a58c4e577fb1274484e624fc8c10f96b23bf3d827b4 files/gibbs-demo 313
-DIST gibbs9_95.tar 598016
+DIST gibbs9_95.tar 598016 RMD160 6c0231b523fc8722af8fbc87172552dbe64de385 SHA1 5b3b4a8bf4a7f67d31f86e6dff0054cbcda98481 SHA256 8d358fb29ad79e03aec142837d63ebd4ddce56a38e36d7d91a668ece12fd78de
 EBUILD gibbs-1995.9.ebuild 1210 RMD160 d36f9357fd636a223ab649cd42f2958e05f1d6da SHA1 a3b7cf06e71e309efa6a245fcf5c598a3600ca43 SHA256 d0addec202bf7370654adedfdf6add9f2d8533d392e246a10bf0ea8bb656ed3d
 MD5 340cd9bced8b4abfa09f74ca33da6f9f gibbs-1995.9.ebuild 1210
 RMD160 d36f9357fd636a223ab649cd42f2958e05f1d6da gibbs-1995.9.ebuild 1210
 SHA256 d0addec202bf7370654adedfdf6add9f2d8533d392e246a10bf0ea8bb656ed3d gibbs-1995.9.ebuild 1210
-MISC ChangeLog 994 RMD160 5ee64c99b7af16ce52f5d0d93c37681e56bfddc5 SHA1 72cfd70a3b53f22c415acb845630a68ffecee05f SHA256 98fc9f7287a1b2c33a52b8983e351e4b59506c76e0ff44b7f0f2bd3a042f8adf
-MD5 00e4aa711cc90762a7867d2287e5cac1 ChangeLog 994
-RMD160 5ee64c99b7af16ce52f5d0d93c37681e56bfddc5 ChangeLog 994
-SHA256 98fc9f7287a1b2c33a52b8983e351e4b59506c76e0ff44b7f0f2bd3a042f8adf ChangeLog 994
+MISC ChangeLog 1077 RMD160 dd26e640703c6a5fa016db9fde93064f353397c2 SHA1 fded481e8272af5c5a1023afaa1eec8b1b7ad525 SHA256 3b27c96a5e84f47454a57b836d6dd4f0fe8bc7838556dffb45e14f3f119ace45
+MD5 f52c06457aad957c51c4875c1c5ade40 ChangeLog 1077
+RMD160 dd26e640703c6a5fa016db9fde93064f353397c2 ChangeLog 1077
+SHA256 3b27c96a5e84f47454a57b836d6dd4f0fe8bc7838556dffb45e14f3f119ace45 ChangeLog 1077
 MISC metadata.xml 387 RMD160 3c4408949179f2c1d55cc49423d944ce077d3d03 SHA1 d3854dbe74c13d22b3eb6eec2c90720bafb87c50 SHA256 426934f62d87bc1d4135a8f27f06297abfb36321f20ed96f3b32beb7f7a44e27
 MD5 feff9fbec978c3c3cda3a0ef4067bdb5 metadata.xml 387
 RMD160 3c4408949179f2c1d55cc49423d944ce077d3d03 metadata.xml 387
 SHA256 426934f62d87bc1d4135a8f27f06297abfb36321f20ed96f3b32beb7f7a44e27 metadata.xml 387
-MD5 66fc93b605c52540a93a218f931abc01 files/digest-gibbs-1995.9 58
-RMD160 c36f3bc379bafb2af5d68d073d48388cf1a094b8 files/digest-gibbs-1995.9 58
-SHA256 ef1d5e0b256601cae20180db7b0bbd5108b77b00878d48070fb2b63977177a79 files/digest-gibbs-1995.9 58
+MD5 a6dec0fbfe8e666ccc13e6f7528227ab files/digest-gibbs-1995.9 220
+RMD160 d115b419f0808061cfb8ddcea5920ae491447df3 files/digest-gibbs-1995.9 220
+SHA256 f765a330e219522dd5e7b38dc8fed1b1e70392046121ad4f86964985a0a858e1 files/digest-gibbs-1995.9 220
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PDVz974XjDVpbkRArAWAJ9gFCGzW7vZWNqP2/m8sAEC4e6LXACfQh1/
+NlJhGYs638N6NhrJfob54LI=
+=xKNz
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest
index e391740b07d3..49e5f860b0a0 100644
--- a/sci-biology/hmmer/Manifest
+++ b/sci-biology/hmmer/Manifest
@@ -1,4 +1,7 @@
-DIST hmmer-2.3.2.tar.gz 1024933
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST hmmer-2.3.2.tar.gz 1024933 RMD160 4bf25fc71f332849c76b0a05bca24e88241cee67 SHA1 aa34cb97cbc43ff3bd92dd111ba5677298fe2d40 SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4
 EBUILD hmmer-2.3.2-r1.ebuild 1164 RMD160 e1b7bd59414d923fbe6f7221a3c5c37ecd635d8b SHA1 4d1193547c7a4d01457ff77bbb704c49a303883d SHA256 c4d5aee8b3d8db7048dca0dae539b725bab07cdbbba70a87b2f86148ac5064f7
 MD5 ed024bdb601035b82108ed33b29ec89a hmmer-2.3.2-r1.ebuild 1164
 RMD160 e1b7bd59414d923fbe6f7221a3c5c37ecd635d8b hmmer-2.3.2-r1.ebuild 1164
@@ -7,17 +10,24 @@ EBUILD hmmer-2.3.2-r2.ebuild 1156 RMD160 6947e07675323388993d1f628f622646949ce00
 MD5 3e3266941037ad483e2a8e0e8cf34f72 hmmer-2.3.2-r2.ebuild 1156
 RMD160 6947e07675323388993d1f628f622646949ce001 hmmer-2.3.2-r2.ebuild 1156
 SHA256 51063fffdaaab66274a2a650dd64e9d1c199eb820e749396db1b1c3960329589 hmmer-2.3.2-r2.ebuild 1156
-MISC ChangeLog 2984 RMD160 e26176898c0114c1a12dee97aac4e6ab9c908b73 SHA1 427d8c674298e9f6cab317e7e1c4b402f94451dc SHA256 391716475841afdf8450a7450507db60d7197009c6c39fa6007a53e4ce84fe5c
-MD5 b78f81f6ebad28e40c7a9e2789abea90 ChangeLog 2984
-RMD160 e26176898c0114c1a12dee97aac4e6ab9c908b73 ChangeLog 2984
-SHA256 391716475841afdf8450a7450507db60d7197009c6c39fa6007a53e4ce84fe5c ChangeLog 2984
+MISC ChangeLog 3067 RMD160 8a1db405c1314b9c89648db69e8ead19438031b3 SHA1 97f38cd0c2ce506bd6ffc218dabef27de2b5436a SHA256 7bf32d9859386ca93e98b1e60021e9a45dac0b78c4b2cfd18329c041f379b961
+MD5 bef011920a1fe250074d23fc50228649 ChangeLog 3067
+RMD160 8a1db405c1314b9c89648db69e8ead19438031b3 ChangeLog 3067
+SHA256 7bf32d9859386ca93e98b1e60021e9a45dac0b78c4b2cfd18329c041f379b961 ChangeLog 3067
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
 MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r1 64
-RMD160 de81d6edb0e87894edf7bdb160515180f8b0e78a files/digest-hmmer-2.3.2-r1 64
-SHA256 dec4479a66bc6be992f47a41f7b77d7062c9171cf7ba059e8ed1866de9a12aef files/digest-hmmer-2.3.2-r1 64
-MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r2 64
-RMD160 de81d6edb0e87894edf7bdb160515180f8b0e78a files/digest-hmmer-2.3.2-r2 64
-SHA256 dec4479a66bc6be992f47a41f7b77d7062c9171cf7ba059e8ed1866de9a12aef files/digest-hmmer-2.3.2-r2 64
+MD5 28575eb6c51470d50c9aedd9186adf55 files/digest-hmmer-2.3.2-r1 238
+RMD160 f05bc343f59359199aa880b37b04f1ba92d4e6c4 files/digest-hmmer-2.3.2-r1 238
+SHA256 ca53d7d150ceecc4efcaff3b70686a592cd3ed0647e2ddfff02963b24f84e123 files/digest-hmmer-2.3.2-r1 238
+MD5 28575eb6c51470d50c9aedd9186adf55 files/digest-hmmer-2.3.2-r2 238
+RMD160 f05bc343f59359199aa880b37b04f1ba92d4e6c4 files/digest-hmmer-2.3.2-r2 238
+SHA256 ca53d7d150ceecc4efcaff3b70686a592cd3ed0647e2ddfff02963b24f84e123 files/digest-hmmer-2.3.2-r2 238
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PEBz974XjDVpbkRApyCAJ9wGi9LPiyVEpSJ9dg2mpWkvTslTwCfchuH
+z8UyrjdTl+42s+JALeN3cAU=
+=TVxR
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/njplot/Manifest b/sci-biology/njplot/Manifest
index 7b83377c02dd..ea17f517a8d1 100644
--- a/sci-biology/njplot/Manifest
+++ b/sci-biology/njplot/Manifest
@@ -1,16 +1,26 @@
-DIST njplot-20050109.tar.bz2 36953
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST njplot-20050109.tar.bz2 36953 RMD160 5240b23c3b52564e28b77ddc4eca84b255facff0 SHA1 aac1677c6c8519ebadf4ea0015d29cbc6bcac647 SHA256 442e32cd69a34a5799db524c73765fe3b474030a1ca8b7a58aa882df515b2a41
 EBUILD njplot-20050109.ebuild 874 RMD160 c973658eff0b7b7c4b2e29dd9db3ce6572014cdb SHA1 73796c169078faee1f1ec52411557d6866a3115f SHA256 31f999129400435d1bb36f31991e986a36c246b42340ac2873711feb8232435f
 MD5 1b3d074e93dd09a3b91af5f9e7301a7d njplot-20050109.ebuild 874
 RMD160 c973658eff0b7b7c4b2e29dd9db3ce6572014cdb njplot-20050109.ebuild 874
 SHA256 31f999129400435d1bb36f31991e986a36c246b42340ac2873711feb8232435f njplot-20050109.ebuild 874
-MISC ChangeLog 1232 RMD160 ca088bc6d8c904d127d8dfa06eb7cb1ace3a1d9d SHA1 bc5f211f4cf465494ef288370f3cde95e813b2a2 SHA256 59ddf70103128c9cd031718166ebf87d81d110acfd8f31786a03ad2acb3679ca
-MD5 621d79aa1af0954272a7002c710b7e76 ChangeLog 1232
-RMD160 ca088bc6d8c904d127d8dfa06eb7cb1ace3a1d9d ChangeLog 1232
-SHA256 59ddf70103128c9cd031718166ebf87d81d110acfd8f31786a03ad2acb3679ca ChangeLog 1232
+MISC ChangeLog 1315 RMD160 63f62e95bb74b0139c65fd4eadd2a47ee9a22460 SHA1 4652844ad77dfc77a58c759d4edf713a9f356370 SHA256 d3a9630f17137b38e05737ea1744e3c0c6ea69bc0fd24d511a1bf8084cde0fa8
+MD5 bef5892132ec821bc0be061bc236988c ChangeLog 1315
+RMD160 63f62e95bb74b0139c65fd4eadd2a47ee9a22460 ChangeLog 1315
+SHA256 d3a9630f17137b38e05737ea1744e3c0c6ea69bc0fd24d511a1bf8084cde0fa8 ChangeLog 1315
 MISC metadata.xml 617 RMD160 1fd16fdfcf0ab68cdb7f5ced5885a13509e9e837 SHA1 da3036947bffa3ed2cb1457f1ae182081d02d29b SHA256 53db3801c66e710045451ef6ab679d93693fe7edf77c050c31e5b1a7bd998f3f
 MD5 2e8370ebc3f030902d6cd313d3ede91e metadata.xml 617
 RMD160 1fd16fdfcf0ab68cdb7f5ced5885a13509e9e837 metadata.xml 617
 SHA256 53db3801c66e710045451ef6ab679d93693fe7edf77c050c31e5b1a7bd998f3f metadata.xml 617
-MD5 50d788774b229a8b182ad47e44b7123d files/digest-njplot-20050109 67
-RMD160 9cb5a95b518b4be24d3ade06c1bd293327504b4e files/digest-njplot-20050109 67
-SHA256 7305a9e5b9000706a93770abc213c05a104b74b82bad465e3c1e27921aaad5f3 files/digest-njplot-20050109 67
+MD5 741d3314fa78a3cb1deb0d2c1ecab31d files/digest-njplot-20050109 247
+RMD160 b17cec7c031c5f3f2822f8ef94328e0b6d28a19f files/digest-njplot-20050109 247
+SHA256 c00ccfa96f952dab2415bec1d0037b51552335bae31915d15e3f49d3f1ea96ef files/digest-njplot-20050109 247
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PEez974XjDVpbkRAmDbAJ9ox/16AdtUdHRVgYhli+lmpmh9GQCgqyCq
+XuBk1GFWgkiJTus2iH7lcxQ=
+=/jfx
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
index 73c147810855..f3b51a15bf85 100644
--- a/sci-biology/phylip/Manifest
+++ b/sci-biology/phylip/Manifest
@@ -1,8 +1,11 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX README.Gentoo 632 RMD160 5f406e5dedd4eb79b1a573e4c2822edb4718947e SHA1 e6dd19d0477dd9cb08df3813c69ec3f23eaeea11 SHA256 4a8b6651a77c58de82c72f34fbf41b386750bbc2b4c928fc2447b38e91824df7
 MD5 db251cf00973e0ed3fbf253071c8cec6 files/README.Gentoo 632
 RMD160 5f406e5dedd4eb79b1a573e4c2822edb4718947e files/README.Gentoo 632
 SHA256 4a8b6651a77c58de82c72f34fbf41b386750bbc2b4c928fc2447b38e91824df7 files/README.Gentoo 632
-DIST phylip-3.65.tar.gz 1036976
+DIST phylip-3.65.tar.gz 1036976 RMD160 f47ba1bad6ec47e954ff16703c84fbe47e5c3f54 SHA1 6b8a0aaa374a5d6a35b2ab2eaefe3fd392318336 SHA256 8f8ab66a58dbe1fdf0b615c13b6d358d6c49195fbaeaabc6190253e895c0d528
 DIST phylip-3.66.tar.gz 1149878 RMD160 f6903257199cc1063ce557b32fb34b72ba170541 SHA1 fe618704ef46883eadddae7788db378f3863f510 SHA256 0fc6971f8f852191a30f8fa0b1f7bcb67e976f90aa2a01f9e97b7a07e06a2464
 EBUILD phylip-3.65-r1.ebuild 1493 RMD160 d237fd812ffde06db5de210faa1f9c486d042c0f SHA1 3ec3cae86f2f22bd26988282ced86433a3be0590 SHA256 673fdc088cefef8ee33d35d7fa7bc20ecbb4ea934219fc4a32d4a4a2a2f0e569
 MD5 a341ee916cf5e0b6996ebcd49dd0e82f phylip-3.65-r1.ebuild 1493
@@ -12,17 +15,24 @@ EBUILD phylip-3.66.ebuild 1492 RMD160 8f3240328ef7e213b7aa9f537ec96f84238331a3 S
 MD5 007965c49156221a060a89143424245c phylip-3.66.ebuild 1492
 RMD160 8f3240328ef7e213b7aa9f537ec96f84238331a3 phylip-3.66.ebuild 1492
 SHA256 1ab356a641452be9d40bbb5c6eb69399cd2b0e5f0f0fc581c21f20f687d5bf36 phylip-3.66.ebuild 1492
-MISC ChangeLog 4161 RMD160 eb465eac3dbcab994a4a1efb09d8f09e960add01 SHA1 74a0d6c86f04a21a3a2413316f812bee60eee2f6 SHA256 90be2350de2838a75e0d7ffcbe30a123a6333651e1b20a0faa93de50485a5f7b
-MD5 b5d05ca586c66087d86e61a01bb4109d ChangeLog 4161
-RMD160 eb465eac3dbcab994a4a1efb09d8f09e960add01 ChangeLog 4161
-SHA256 90be2350de2838a75e0d7ffcbe30a123a6333651e1b20a0faa93de50485a5f7b ChangeLog 4161
+MISC ChangeLog 4244 RMD160 29c2c3ed0d92b069d66d5554630486d1f4f903c1 SHA1 cc979bbf50c6516b654b3e5131ee2140ca361d4f SHA256 c085b6b3e544b1cd524de5bb9a61f3fd0444f4da725e0a733b51d781f9af272c
+MD5 64756292bfcd3980f75cf07692a52a8f ChangeLog 4244
+RMD160 29c2c3ed0d92b069d66d5554630486d1f4f903c1 ChangeLog 4244
+SHA256 c085b6b3e544b1cd524de5bb9a61f3fd0444f4da725e0a733b51d781f9af272c ChangeLog 4244
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
 MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 d87091a1c48c794109dbfb88336d9068 files/digest-phylip-3.65-r1 64
-RMD160 8dcc32d25dcea8e90a2cd039ab74fe55578760a6 files/digest-phylip-3.65-r1 64
-SHA256 e5fc150d12159464137d6e641c0232005dfef77a5d615f9b71e38284ca74dfd3 files/digest-phylip-3.65-r1 64
+MD5 4e9fd7fd6bd290f29e3540c7f496c8be files/digest-phylip-3.65-r1 238
+RMD160 afd6c56b5efc41946f0731468a51fb0aa3966b2a files/digest-phylip-3.65-r1 238
+SHA256 75f6b3497bced93007fa087693d8e11a31496114427206adbda770c7440109a9 files/digest-phylip-3.65-r1 238
 MD5 0e37adbd8974fce8a0698886ac6a7ae2 files/digest-phylip-3.66 238
 RMD160 2d0884b5c6a7ba4fdf356addb0697c79f2a6c4c3 files/digest-phylip-3.66 238
 SHA256 48e13f7415ff54c716d44cfce284886e109060c703644111c26f8bf5a2a12ae4 files/digest-phylip-3.66 238
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PE+z974XjDVpbkRAhGvAKCfK7aNVIQwZrwrtbuSaEROSUNJrACgmkw4
+i7qSMuYvuNH/ZWi4a4szsVg=
+=QqcK
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/probcons/Manifest b/sci-biology/probcons/Manifest
index 3c79ab61eea5..428ec11506c0 100644
--- a/sci-biology/probcons/Manifest
+++ b/sci-biology/probcons/Manifest
@@ -1,16 +1,19 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX 1.10-fix-cxxflags.patch 845 RMD160 1e04c84b35c245623619c6d5a7128a8ab1c880af SHA1 9d3ecd0da754d899cd4b4016bf2dbffe5e9d87b6 SHA256 73a298114996b5d879b9ec3253d104464cb456d19382668cdf75bfe9f93f11de
 MD5 bcc20b9c5e249f07fb535f0744f816e2 files/1.10-fix-cxxflags.patch 845
 RMD160 1e04c84b35c245623619c6d5a7128a8ab1c880af files/1.10-fix-cxxflags.patch 845
 SHA256 73a298114996b5d879b9ec3253d104464cb456d19382668cdf75bfe9f93f11de files/1.10-fix-cxxflags.patch 845
-DIST probcons_v1_10.tar.gz 43004 RMD160 ba7caa3cadd702c3dc00c20f01bfb22416435784 SHA256 f7a775ac4ba3b3261c0bbe5d2c203c96fc2551e67448aefbac83b461c931b518
+DIST probcons_v1_10.tar.gz 43004 RMD160 ba7caa3cadd702c3dc00c20f01bfb22416435784 SHA1 773d82f6883202ec41e5dee39713b5db649ef5b0 SHA256 f7a775ac4ba3b3261c0bbe5d2c203c96fc2551e67448aefbac83b461c931b518
 EBUILD probcons-1.10.ebuild 1236 RMD160 b24658a6866f556bab2d9ee041540ed65fba961b SHA1 2302f7a9c2a1ba349b3949546187e34e2c7aeafe SHA256 86a6355ad1d5a3bc7914579262047bde097c3228d5ef88ae6a988beb3577c964
 MD5 7ffee477cf8d489117305b770a90d766 probcons-1.10.ebuild 1236
 RMD160 b24658a6866f556bab2d9ee041540ed65fba961b probcons-1.10.ebuild 1236
 SHA256 86a6355ad1d5a3bc7914579262047bde097c3228d5ef88ae6a988beb3577c964 probcons-1.10.ebuild 1236
-MISC ChangeLog 894 RMD160 5b0c0db0dbe5496392c79c841afe910a4a9eaf3f SHA1 b29ca2021278818df671b8018c00cadf3c7d79e1 SHA256 fb3d683a74a326095cab394b91ae7d83af24b4c60e01b80b05c9bb4b49801a0f
-MD5 daf592e9113aae7db34d359be7f78c06 ChangeLog 894
-RMD160 5b0c0db0dbe5496392c79c841afe910a4a9eaf3f ChangeLog 894
-SHA256 fb3d683a74a326095cab394b91ae7d83af24b4c60e01b80b05c9bb4b49801a0f ChangeLog 894
+MISC ChangeLog 976 RMD160 d9c13d0cae00bf31709c8024423ada92a64c7b2e SHA1 6f8ea7415b67227711267f9df66cb6afa9fa5b21 SHA256 f66c87b3cce49d34e0915132cf1dc1d2ee77c8608602bb5fafdd45f605b24815
+MD5 75d01b3a3c18ea5d78e0df8b34d394cb ChangeLog 976
+RMD160 d9c13d0cae00bf31709c8024423ada92a64c7b2e ChangeLog 976
+SHA256 f66c87b3cce49d34e0915132cf1dc1d2ee77c8608602bb5fafdd45f605b24815 ChangeLog 976
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
 MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
@@ -18,3 +21,10 @@ SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata
 MD5 09ec4c47c33e46e812d1c8a09f00a91a files/digest-probcons-1.10 241
 RMD160 2d5910f5cca5eb03d3d6e7ca83954774d4080051 files/digest-probcons-1.10 241
 SHA256 6dcaf5dcb70c5db87bebfb7d61342cc1f56758d67fc2db674ae900bc685406ef files/digest-probcons-1.10 241
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PFYz974XjDVpbkRAqjRAKCvF0CqHme2MAZLQk9oCUEp2n/TfACfVeS6
+1CRNfDaMVoIL5akNQ9XEfwA=
+=lZgi
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest
index 161ae0736dce..6ec2f46499d8 100644
--- a/sci-biology/qrna/Manifest
+++ b/sci-biology/qrna/Manifest
@@ -1,20 +1,30 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX 26qrna 30 RMD160 c6eb4ba1c559f2cce296915c3d166e134d54b7c4 SHA1 34b74c24f599e5387dd788ec2df1752b043b7b9a SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7
 MD5 9127b0a4628230fc3bf2e201ca7519a9 files/26qrna 30
 RMD160 c6eb4ba1c559f2cce296915c3d166e134d54b7c4 files/26qrna 30
 SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7 files/26qrna 30
-DIST qrna-2.0.3c.tar.bz2 6423705
+DIST qrna-2.0.3c.tar.bz2 6423705 RMD160 df0fe89e45d64cf6f205dd3e524a9a27d6c14961 SHA1 1c577a495d538eb50531c4672decae85649ac066 SHA256 fc88b58dddab26f20477a50340453e9d360ea34956ba526f7db6959283399b1c
 EBUILD qrna-2.0.3c.ebuild 1387 RMD160 b79532ced361b82667ab37b2599a9001e2932b66 SHA1 e2d8fc4cd7721bbd242de5e29494d0ac8d83ac11 SHA256 563302035a02c4f6181481fef074abbc3f0e954c17eaac825ae2c2a1c95ce172
 MD5 620917a1f1bec12a89992fc89d6fd50f qrna-2.0.3c.ebuild 1387
 RMD160 b79532ced361b82667ab37b2599a9001e2932b66 qrna-2.0.3c.ebuild 1387
 SHA256 563302035a02c4f6181481fef074abbc3f0e954c17eaac825ae2c2a1c95ce172 qrna-2.0.3c.ebuild 1387
-MISC ChangeLog 2119 RMD160 26b58ecc79e42f593812a452a95607110a1a5b09 SHA1 393b4d17f617e8b2199a4cc5dc126b41a38870f9 SHA256 db1f317620b8bc4d729abfb99194eaadc243ae71059bcf383067782861f3b61b
-MD5 0445f9b4967cff9d2c8d327a910f96b0 ChangeLog 2119
-RMD160 26b58ecc79e42f593812a452a95607110a1a5b09 ChangeLog 2119
-SHA256 db1f317620b8bc4d729abfb99194eaadc243ae71059bcf383067782861f3b61b ChangeLog 2119
+MISC ChangeLog 2202 RMD160 351638006e93d786896b7e9232898375a9178086 SHA1 ab65b075449fc5774108e00b977c2a0c3717f05d SHA256 8f6bb719944787c7fc0b6dca4e28b7571f836bbdfbb02e9381b2d4137457e9d8
+MD5 a01b15be7f85824a7c072560b07450cc ChangeLog 2202
+RMD160 351638006e93d786896b7e9232898375a9178086 ChangeLog 2202
+SHA256 8f6bb719944787c7fc0b6dca4e28b7571f836bbdfbb02e9381b2d4137457e9d8 ChangeLog 2202
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
 MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 12392df208522b818f5f2c72a7770a0e files/digest-qrna-2.0.3c 65
-RMD160 d6b728ee4a02a252c3071fe7bfc1eafbddd393fa files/digest-qrna-2.0.3c 65
-SHA256 315c07fd05f7fb1d6ad7595a881a849a8cb4755bc3d0cba91741cab95422657c files/digest-qrna-2.0.3c 65
+MD5 6b9b1477eb3bc8923f4c58daaf7b33f2 files/digest-qrna-2.0.3c 241
+RMD160 33b50ce13e5cfcf0e89e6560bd56a00739afd1e1 files/digest-qrna-2.0.3c 241
+SHA256 c5d90b97889d5d0cde4f7f0e55715cbee8a0681ebb7e0f2632a92f8f67364f2e files/digest-qrna-2.0.3c 241
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PGAz974XjDVpbkRAgv7AKC4SbAQhACr96sYCf3o/hBJAOTVrwCgyFz3
+PiZkbQFw+ZB9xgy5G35S3TE=
+=Rabg
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/rnaview/Manifest b/sci-biology/rnaview/Manifest
index b8365cc1f951..9fd4869ca8b0 100644
--- a/sci-biology/rnaview/Manifest
+++ b/sci-biology/rnaview/Manifest
@@ -1,16 +1,26 @@
-DIST rnaview-20040713.tar.bz2 433916
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST rnaview-20040713.tar.bz2 433916 RMD160 1aa0a3dd7af24a543c00027b958bbaaedd0f163a SHA1 b87d6b6936f2942fadbd4e339632effd0835239e SHA256 0961779c83e247a4b04c02d90d3850e8c4c889b630194ea1516cbeb6c6dbad17
 EBUILD rnaview-20040713.ebuild 948 RMD160 0c1d747c5b0a894402adbb94fcf2e0dc4aecc656 SHA1 47439329ae341d6126c33db8562c6773cba960a6 SHA256 41e9c5699fb2f8e837a11bfac83319a520df603a12a369393ebf950d93a6e71c
 MD5 0577787e11096844b94552cd22885fe4 rnaview-20040713.ebuild 948
 RMD160 0c1d747c5b0a894402adbb94fcf2e0dc4aecc656 rnaview-20040713.ebuild 948
 SHA256 41e9c5699fb2f8e837a11bfac83319a520df603a12a369393ebf950d93a6e71c rnaview-20040713.ebuild 948
-MISC ChangeLog 1218 RMD160 aa02ea4c06d9b48b75d1ac5454bd759c417c50bb SHA1 0ea1d62553dc3ba6fc242100e6cce4de5e9d60c5 SHA256 033984300ccb558fe7590a7f38aa78d4ef15bfd45b826d7148369496a7c51e16
-MD5 97a0cc771153461cce9fd8814d02dc5f ChangeLog 1218
-RMD160 aa02ea4c06d9b48b75d1ac5454bd759c417c50bb ChangeLog 1218
-SHA256 033984300ccb558fe7590a7f38aa78d4ef15bfd45b826d7148369496a7c51e16 ChangeLog 1218
+MISC ChangeLog 1301 RMD160 5fc4ede4c8985338247054490a9aee522a2e276d SHA1 b20e150d256530467a79da4c6a15ba68f0a5d195 SHA256 7c15d888b6eb787f5cb27ab5d44f28bc51725c310b6c87f725b0ac61430a2725
+MD5 e283e615c80bed7dc5ad41a95b6c03ba ChangeLog 1301
+RMD160 5fc4ede4c8985338247054490a9aee522a2e276d ChangeLog 1301
+SHA256 7c15d888b6eb787f5cb27ab5d44f28bc51725c310b6c87f725b0ac61430a2725 ChangeLog 1301
 MISC metadata.xml 570 RMD160 e4eaa219425a7d2522fd1d148d6ea6bd4940a3cf SHA1 00a65e9b64e6e8a6071fec4abad0d41038872c81 SHA256 361679aa0f120fbb2370915ad12b84a7c1f707fd6c5de1da049d4c131986aea3
 MD5 23a5e9360a9033e3eef00365f039c635 metadata.xml 570
 RMD160 e4eaa219425a7d2522fd1d148d6ea6bd4940a3cf metadata.xml 570
 SHA256 361679aa0f120fbb2370915ad12b84a7c1f707fd6c5de1da049d4c131986aea3 metadata.xml 570
-MD5 4b6b52afb691430043a6ed83b25a2835 files/digest-rnaview-20040713 69
-RMD160 ec73d48b0a1f50ac2ef0967ba9986ebec615c639 files/digest-rnaview-20040713 69
-SHA256 f6a1b861cb405ee5ac4ab8207ffa1471a26a32b8cd98830d552d223ed9d76972 files/digest-rnaview-20040713 69
+MD5 330f23f94da0e97ea0d8e51fb5ccc471 files/digest-rnaview-20040713 253
+RMD160 b2f10eaca25b83fecbf3ee5f22b616b541664572 files/digest-rnaview-20040713 253
+SHA256 093cd92b6305214e1ca5ed516a9780a1b053ac9b26b37b509c8af44ab66c4bf4 files/digest-rnaview-20040713 253
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PGdz974XjDVpbkRAuBGAKCOYDLHrcDWdPy1eaCNPeG0EVnAngCeMd41
+OgNppOHs4/2MSZE46Wlx3i8=
+=2wLH
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 57634117eaec..0e84aeae69bd 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,5 +1,8 @@
-DIST seaview-20041220.tar.bz2 115192
-DIST seaview-20060213.tar.bz2 114995 RMD160 c3409b5e06f15e983db4912812381ee5d5894ea9 SHA256 be058f53f07cec46978f10ddad8794bbe79762cf089d18b5cbe7cb6ed15c54fc
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST seaview-20041220.tar.bz2 115192 RMD160 a557e906c9115db74ddfdecc4fdc647df336b3c3 SHA1 f237a7ccc0ba7e69c6b61a6aaac4ae4d0be12c71 SHA256 045b09e08d49f9630243e3bc19d8cc630874e1c4f64a1d91997e76e5af2cd6d7
+DIST seaview-20060213.tar.bz2 114995 RMD160 c3409b5e06f15e983db4912812381ee5d5894ea9 SHA1 6dffddf934e82eb155e47dcd58f9a5612511fcff SHA256 be058f53f07cec46978f10ddad8794bbe79762cf089d18b5cbe7cb6ed15c54fc
 EBUILD seaview-20041220.ebuild 882 RMD160 76a5d3e970c20d034ac831a7b01c7665e4450bc8 SHA1 e5155acaa8b728a9599557dff1a3d772d3acdfba SHA256 bfd3296f1250f436767fe8ab774d9e4de08febd201e61fe7515f120fff98fc3d
 MD5 680ece30974abad6f113a0f92824ea23 seaview-20041220.ebuild 882
 RMD160 76a5d3e970c20d034ac831a7b01c7665e4450bc8 seaview-20041220.ebuild 882
@@ -8,17 +11,24 @@ EBUILD seaview-20060213.ebuild 912 RMD160 c9f5472b0b098ebcd7a4984fbb90c00eb88647
 MD5 bb7e5c881522e18af3c3376bed076d10 seaview-20060213.ebuild 912
 RMD160 c9f5472b0b098ebcd7a4984fbb90c00eb886478e seaview-20060213.ebuild 912
 SHA256 5a60af1cf1603a3054362ee031bb6844b49a7af9a5a0d2e52f4140c547055af9 seaview-20060213.ebuild 912
-MISC ChangeLog 2079 RMD160 dd6a1a41ae9167caf40625de144da5b8f6523344 SHA1 453390a87e956af8a0e4608ebacd46bafc2ae201 SHA256 577a7051941c5db2ad21ec6732b2fb2be83f1dc8e613e8dfa14f3ca2b400065e
-MD5 aa914750889172861bd149fe7851c6b5 ChangeLog 2079
-RMD160 dd6a1a41ae9167caf40625de144da5b8f6523344 ChangeLog 2079
-SHA256 577a7051941c5db2ad21ec6732b2fb2be83f1dc8e613e8dfa14f3ca2b400065e ChangeLog 2079
+MISC ChangeLog 2162 RMD160 bc02c0e827f05bc34afe132967006e17598bfe82 SHA1 a32032d11a08ad65996a36110a296d71a598289c SHA256 cb3531af39ad90e677cb98a98cd834f5e42ef6973b716766234262755a5ab730
+MD5 4f3ebb70598794065ac66b35543f1218 ChangeLog 2162
+RMD160 bc02c0e827f05bc34afe132967006e17598bfe82 ChangeLog 2162
+SHA256 cb3531af39ad90e677cb98a98cd834f5e42ef6973b716766234262755a5ab730 ChangeLog 2162
 MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529
 MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622
 RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622
 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 metadata.xml 622
-MD5 d13f3abed50e95fdd7a2ced7815ebdc3 files/digest-seaview-20041220 69
-RMD160 572bdb6fce1d9265b330e23fe16b2351dd1aca73 files/digest-seaview-20041220 69
-SHA256 55c596b8feb348ae50763670f4e7a341f0f4d235a01f5bc0fc208e71a927f23c files/digest-seaview-20041220 69
+MD5 5b1989dfbbf9ea843666ea3218872d1e files/digest-seaview-20041220 253
+RMD160 49aefa5d6c963205cbe4ff5a47d5045f21f0d079 files/digest-seaview-20041220 253
+SHA256 36bbcb192079998e4b6b5601cdba9d35fe7a8cf850cfb97b4d5cc93ea11e90e8 files/digest-seaview-20041220 253
 MD5 12f7be8bda68958f3fd458149b5cdb6a files/digest-seaview-20060213 253
 RMD160 2c5874f5e8f1e778044c4f1c462ae158c9aaaf25 files/digest-seaview-20060213 253
 SHA256 b91aecb8cac59c15a14b1e5f925c8b065f3a929f636adbea74e5331fbe4153e5 files/digest-seaview-20060213 253
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PHCz974XjDVpbkRAisvAJ4jPKx3/mLZpuRFhdRVWlzMClXrtACdEEnI
++kiGBpnVcdB1/Vi4BiPxS1E=
+=V9g/
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/sim4/Manifest b/sci-biology/sim4/Manifest
index 3bae99951e48..20b688517359 100644
--- a/sci-biology/sim4/Manifest
+++ b/sci-biology/sim4/Manifest
@@ -1,16 +1,26 @@
-DIST sim4.tar.gz 60814
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST sim4.tar.gz 60814 RMD160 5acad71daa94893025a21b73b416dd3903078be5 SHA1 11a9170ea03990268d409056084415d725c6290b SHA256 0d65166c1d1951e1d0b83e5d221f23f07462b9d8c46ea0d0569f66e35a5229ee
 EBUILD sim4-20030921.ebuild 603 RMD160 8b4e1e06ac8e77de5f566ff680f2aed3fb19afa4 SHA1 fda8dc45e575d4116ed51065164e4097b87ae093 SHA256 7c83f55613b796073c5a179f8098ce998ba8532b26bce1d0003984b2290f3a47
 MD5 62568dc0e367e6f5e9927232b54a8617 sim4-20030921.ebuild 603
 RMD160 8b4e1e06ac8e77de5f566ff680f2aed3fb19afa4 sim4-20030921.ebuild 603
 SHA256 7c83f55613b796073c5a179f8098ce998ba8532b26bce1d0003984b2290f3a47 sim4-20030921.ebuild 603
-MISC ChangeLog 1007 RMD160 5a0e40383acecd0f7aea7c5e2e1c53f68321032e SHA1 19c11bd42b1c9fe7d38fc7b56944dee26c363d1e SHA256 da1bcf658594da85b901d08b2343cae721f4a0f0ff533740213fa2cb9f9ae10e
-MD5 748aa907a0417a2f3ff8f6b7560f8b53 ChangeLog 1007
-RMD160 5a0e40383acecd0f7aea7c5e2e1c53f68321032e ChangeLog 1007
-SHA256 da1bcf658594da85b901d08b2343cae721f4a0f0ff533740213fa2cb9f9ae10e ChangeLog 1007
+MISC ChangeLog 1090 RMD160 dfe108ec8469b364cd6fa28d90c2df9b12d30140 SHA1 68beb58f05bddfeef842ba28faacc57823097e77 SHA256 6dc67c6756cb4b1f2a1a1bca3aae45419942a7730f2824d04ab1f0a41836779b
+MD5 321fc78f0d3e8a8ba0d3da8fee274478 ChangeLog 1090
+RMD160 dfe108ec8469b364cd6fa28d90c2df9b12d30140 ChangeLog 1090
+SHA256 6dc67c6756cb4b1f2a1a1bca3aae45419942a7730f2824d04ab1f0a41836779b ChangeLog 1090
 MISC metadata.xml 1132 RMD160 67881658e1e6e7cefb58021bbbe03d23608a4920 SHA1 8077e381d42bd419ba04fa86e1a5d1484b84a990 SHA256 d64a639eb465427952278fe2c829c51010b4c2489a253116172ff8da3bbef818
 MD5 2978f8f894fb870d6e85ea4e1a9c0bd1 metadata.xml 1132
 RMD160 67881658e1e6e7cefb58021bbbe03d23608a4920 metadata.xml 1132
 SHA256 d64a639eb465427952278fe2c829c51010b4c2489a253116172ff8da3bbef818 metadata.xml 1132
-MD5 743d4ddb73b01bef0fb3408b4b7b129f files/digest-sim4-20030921 55
-RMD160 c8021b1c509edcd73ad6c156d539bf8c350b98ca files/digest-sim4-20030921 55
-SHA256 338fc87d1360f30521296adbe9b36ffbc8ac2aa9340c281f7599bb3bbb12d38f files/digest-sim4-20030921 55
+MD5 3f03cd201a49cd9c88fad946120bcabb files/digest-sim4-20030921 211
+RMD160 c4133cafb37b5f6f52b1a9644c762b5b0670a32a files/digest-sim4-20030921 211
+SHA256 ce79a898aa9bf91677be729a4df64d05a2e769385098c4d52c89ee49926cb42e files/digest-sim4-20030921 211
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PHoz974XjDVpbkRAjoRAKDGlFblMUBhtSQdzPsfMrD2Mr88HgCgq2L2
+AjJfPuXRW3plaSuX0b/3VRg=
+=xPba
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/tree-puzzle/Manifest b/sci-biology/tree-puzzle/Manifest
index 35b28e86b084..0b240ff372a7 100644
--- a/sci-biology/tree-puzzle/Manifest
+++ b/sci-biology/tree-puzzle/Manifest
@@ -1,5 +1,8 @@
-DIST tree-puzzle-5.1.tar.gz 612216
-DIST tree-puzzle-5.2.tar.gz 875142
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST tree-puzzle-5.1.tar.gz 612216 RMD160 8287cc27c5c0da181c886304ecdc0290504778d1 SHA1 f55464587cd04c9afb0eb83231318d91b8614798 SHA256 3977686491ba9e7a38291a845a24dbc3354b239b9e2ca141faa81f5e4b670056
+DIST tree-puzzle-5.2.tar.gz 875142 RMD160 8a69f5ab2ad56a05c0faa6cd02e344c19271bf7a SHA1 fd52a9f04dc871b765d9f7464f68bdb8edc22e37 SHA256 3396d3b80b03b0600afb479dc33f0bd3e5631298337295a4fa454211ac44c3fb
 EBUILD tree-puzzle-5.1.ebuild 958 RMD160 2c16eb66ab79c13501b40b54b80ef0b5bd983b39 SHA1 179d92ae963888afaeaf5e18f2bdfa50429f5749 SHA256 087f6f23129286390516bb7296a154a407c0ffe7e64f1954b0a9c295f796a93d
 MD5 d1afc9985cfeb342e821f3ee18565431 tree-puzzle-5.1.ebuild 958
 RMD160 2c16eb66ab79c13501b40b54b80ef0b5bd983b39 tree-puzzle-5.1.ebuild 958
@@ -8,17 +11,24 @@ EBUILD tree-puzzle-5.2.ebuild 1399 RMD160 666fc3971cc0e62546331fcf0033ffc7f0dd2e
 MD5 a14573d64d84ba2acbdd9b320f17f7f8 tree-puzzle-5.2.ebuild 1399
 RMD160 666fc3971cc0e62546331fcf0033ffc7f0dd2e2a tree-puzzle-5.2.ebuild 1399
 SHA256 66ed4754ebbcede60b8742c65c8fd5a422f7df0baed6bd14c6e6316a17dfe565 tree-puzzle-5.2.ebuild 1399
-MISC ChangeLog 2218 RMD160 4be035f53341e8e60b637fe360e6bf13370bec51 SHA1 6ac5911442e0669d16efac48e8bf95acbf208f10 SHA256 225f03e4056d4b3273ba89b6ae54dcae8c088cd587f377cf98b44f645845b4e1
-MD5 288c312f5b2d4a958c9d1b45012dfbdd ChangeLog 2218
-RMD160 4be035f53341e8e60b637fe360e6bf13370bec51 ChangeLog 2218
-SHA256 225f03e4056d4b3273ba89b6ae54dcae8c088cd587f377cf98b44f645845b4e1 ChangeLog 2218
+MISC ChangeLog 2302 RMD160 1fe62d82981a053d04452edc1a3db08110f1157e SHA1 e8f2d67c70a7fc8c4aa5c383a4dee713b3b7c922 SHA256 fe50bef286852b35a50888230c25a91a039b31dc272f2a08b60964075992f07e
+MD5 0e9eda6f62a00afe1f6feaac85785618 ChangeLog 2302
+RMD160 1fe62d82981a053d04452edc1a3db08110f1157e ChangeLog 2302
+SHA256 fe50bef286852b35a50888230c25a91a039b31dc272f2a08b60964075992f07e ChangeLog 2302
 MISC metadata.xml 1556 RMD160 e152b964d0efb69cca645cb728e56e5cc95ffe16 SHA1 930142f682706a5d8bb8c2b3ee65d25e2e2c346b SHA256 678aaf64be3cfdd3ad9c4c3758c09d754696682b04b6b60fc643c55deb402c9c
 MD5 100f2d2d88cc0554dbc5d0d7bd1ecf7f metadata.xml 1556
 RMD160 e152b964d0efb69cca645cb728e56e5cc95ffe16 metadata.xml 1556
 SHA256 678aaf64be3cfdd3ad9c4c3758c09d754696682b04b6b60fc643c55deb402c9c metadata.xml 1556
-MD5 432840347efef142f52c23eb03c21e89 files/digest-tree-puzzle-5.1 67
-RMD160 0d4b798592b4d059ced26a82accc8b0aab26fc38 files/digest-tree-puzzle-5.1 67
-SHA256 9e32ec19db7e83ed4b863d39b4bfdbf57a57dc558ae7e864714a36906d993f10 files/digest-tree-puzzle-5.1 67
-MD5 91165e7d2ebcd4a70e55b5e8bea21e43 files/digest-tree-puzzle-5.2 67
-RMD160 0d53c7327a47c016349780b0fab99cf149ce893f files/digest-tree-puzzle-5.2 67
-SHA256 8f04188245031b502803c2b047f1b57cec050764cff9c1a60d5fece1937aff1a files/digest-tree-puzzle-5.2 67
+MD5 879e2a6929ab154bf8295db41d50c83a files/digest-tree-puzzle-5.1 247
+RMD160 7ca99ca16c53cc8ad0290bd7156eac26036f9142 files/digest-tree-puzzle-5.1 247
+SHA256 cbe2e36a79f5af30241dcd2d7ea581d93610fdfcd2a5d255a4c6a08f5892fb3e files/digest-tree-puzzle-5.1 247
+MD5 be10d9e77f3b0ee18ff06f1ec8bdf01c files/digest-tree-puzzle-5.2 247
+RMD160 90931a8b38ca33c8bdb5fa810b8295844d0fa07d files/digest-tree-puzzle-5.2 247
+SHA256 80e8c47c14313e2c6ec7c8478087e936f03c9565acb596b0ef28b269f987a493 files/digest-tree-puzzle-5.2 247
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PIjz974XjDVpbkRAuMmAKDQzIsRy1l3XM0TedlncbrmCLii8ACgrdyf
+xYNpd5kmO6IcQzFydQzTaec=
+=KBVh
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/treeviewx/Manifest b/sci-biology/treeviewx/Manifest
index 0b16b6592367..a91207173bbe 100644
--- a/sci-biology/treeviewx/Manifest
+++ b/sci-biology/treeviewx/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX treeviewx-gcc-3.4.patch 1993 RMD160 1f9bc8764baee71be7490ac80744ae201f22ea1b SHA1 60fe792aea3f8be41ab0efc453dd52d31ea3f783 SHA256 8a6449a278d0e24b7430a327e0e8505fe590b4b6c4d57318534bac72f15457bc
 MD5 c208b90b136cb1d6147844b45c943663 files/treeviewx-gcc-3.4.patch 1993
 RMD160 1f9bc8764baee71be7490ac80744ae201f22ea1b files/treeviewx-gcc-3.4.patch 1993
@@ -6,19 +9,26 @@ AUX treeviewx-wxt.patch 1854 RMD160 9531ffb260bff7d7c26023558db07b7773c790b7 SHA
 MD5 1d7d72d2a9d090385ef5e576f587ef6f files/treeviewx-wxt.patch 1854
 RMD160 9531ffb260bff7d7c26023558db07b7773c790b7 files/treeviewx-wxt.patch 1854
 SHA256 2881ec0a4644434320d284a4024f18cba765245de99fa7b50c3cc20ab7a37eb4 files/treeviewx-wxt.patch 1854
-DIST tv-0.5.1.tar.gz 426745
+DIST tv-0.5.1.tar.gz 426745 RMD160 27c92a0f43c59c8988fe2d1410adb6de429e94c9 SHA1 0b0887477ca0d9ded6d0ee8bef014b6208e1fc14 SHA256 118bdbefb3f21636b1ba9da92e1b2029cb4d7d9944f4d02d2deace4ebb14c2d1
 EBUILD treeviewx-0.5.1.ebuild 1130 RMD160 9e9151f3294911c2f87c9c571068b0eececbaca5 SHA1 a5572303e6b2ee56fe2fd56762727086073bd4d0 SHA256 d6c0dba5e57316f7d4247a6152daa23c2c269ee9b5bf4ad98fbee700d2910f9f
 MD5 6b2b7710b5d8ae6b1b4cfcb4b84e6cd1 treeviewx-0.5.1.ebuild 1130
 RMD160 9e9151f3294911c2f87c9c571068b0eececbaca5 treeviewx-0.5.1.ebuild 1130
 SHA256 d6c0dba5e57316f7d4247a6152daa23c2c269ee9b5bf4ad98fbee700d2910f9f treeviewx-0.5.1.ebuild 1130
-MISC ChangeLog 2546 RMD160 2d5a0d9624c53daaa0233c68cabc3ad9c42623d4 SHA1 5df0ae357dec2ff33a89e86e299e3537dd8a2128 SHA256 4797d58d11a682d71ad1dbbfcac4acbc03dad8cdbfb84d25751a67d965f8d04f
-MD5 97029ba597270ee7b4b162caac02311a ChangeLog 2546
-RMD160 2d5a0d9624c53daaa0233c68cabc3ad9c42623d4 ChangeLog 2546
-SHA256 4797d58d11a682d71ad1dbbfcac4acbc03dad8cdbfb84d25751a67d965f8d04f ChangeLog 2546
+MISC ChangeLog 2629 RMD160 75aba49305c8faa563169ebf70e9737e9fcc2fca SHA1 da4a29110ddd6ba2eacd0b5999d9a5df6788be1e SHA256 9d19dfd08a03f72f3ec1f53908c85603da3944818706ae64c619513323f4511d
+MD5 4852463f0a2bc5dceaeacc0ef931b894 ChangeLog 2629
+RMD160 75aba49305c8faa563169ebf70e9737e9fcc2fca ChangeLog 2629
+SHA256 9d19dfd08a03f72f3ec1f53908c85603da3944818706ae64c619513323f4511d ChangeLog 2629
 MISC metadata.xml 531 RMD160 106b4a1816bca4933e7841c9509be25678ef3c86 SHA1 fb289150f453d53ab9f7343511fb22e36562373c SHA256 bede76a003b94174e1358e950c77fe3dfeb2df31095eb9cb357e37ef4c83072f
 MD5 28f4cdb441545af65553f6c46228375b metadata.xml 531
 RMD160 106b4a1816bca4933e7841c9509be25678ef3c86 metadata.xml 531
 SHA256 bede76a003b94174e1358e950c77fe3dfeb2df31095eb9cb357e37ef4c83072f metadata.xml 531
-MD5 a05c75ec566a1e23526e5df960797f69 files/digest-treeviewx-0.5.1 60
-RMD160 f295ca875a3524ed7119503465be0628d074ded6 files/digest-treeviewx-0.5.1 60
-SHA256 242cc3988dc7053a5b608b3d6e8fbf7719b81faab9a70b21a33a9eccea91f94b files/digest-treeviewx-0.5.1 60
+MD5 9ce2886eea180c5d5203761995a6b05a files/digest-treeviewx-0.5.1 226
+RMD160 857500e04ebf1a1c54bfc20c982459bb72d474ee files/digest-treeviewx-0.5.1 226
+SHA256 5b14f084471a2fbe827ab3ae1a78b44c531c83a40c1eaf700d2c1c2884800eed files/digest-treeviewx-0.5.1 226
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PJAz974XjDVpbkRAuIfAJ0cz8r1zNTyG+0lj7m+3nai6GsbhgCdHGkV
+RL1Hva6dYnsbUsXL8AuzC7c=
+=6j7u
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest
index 9d4fd0a8d011..21f0b721935e 100644
--- a/sci-biology/trnascan-se/Manifest
+++ b/sci-biology/trnascan-se/Manifest
@@ -1,16 +1,26 @@
-DIST trnascan-se-1.23.tar.bz2 482202
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST trnascan-se-1.23.tar.bz2 482202 RMD160 41180bc008e64258470a241418467b9b97220669 SHA1 2b35e9b63854bb8ceb9fb602582f7de47d15d095 SHA256 a1d18a0b9decf4a93fa6cf02fb5867367729449fc8e47e3749c91678fc1f344a
 EBUILD trnascan-se-1.23-r1.ebuild 1243 RMD160 8539ca8d98bc5dad8a8df7d89b0fd8eab79e8302 SHA1 93e9dda7f19c5e91c94ebc6af66b2f4b6e8af224 SHA256 5822c2bb47e7644aae2b73fb9c590e23a031aba709d26a07633aaa956c23534d
 MD5 6a56c9b05e3eaddc00bca56ea958ac98 trnascan-se-1.23-r1.ebuild 1243
 RMD160 8539ca8d98bc5dad8a8df7d89b0fd8eab79e8302 trnascan-se-1.23-r1.ebuild 1243
 SHA256 5822c2bb47e7644aae2b73fb9c590e23a031aba709d26a07633aaa956c23534d trnascan-se-1.23-r1.ebuild 1243
-MISC ChangeLog 984 RMD160 9250e90f89bf0fbe403d20383a2b37b0e234cfd5 SHA1 6f7f979d91069c30bc9053800adb0216ebd5a530 SHA256 e5152bce67437be4682d9b0eb7f5c6189ae0c04a5fec11e20ea82075db5caf30
-MD5 2340f7aca0a309643d3319ae7494b795 ChangeLog 984
-RMD160 9250e90f89bf0fbe403d20383a2b37b0e234cfd5 ChangeLog 984
-SHA256 e5152bce67437be4682d9b0eb7f5c6189ae0c04a5fec11e20ea82075db5caf30 ChangeLog 984
+MISC ChangeLog 1067 RMD160 b1cbf9e9507554abf3410f7ab6cfd29c3814f4b8 SHA1 a742df616586908ba1ba907bbd582bc7ad3b4ad1 SHA256 0c2429f9a6c655eec4753f4c1f1e3d844e211d4cec4d3bf0375e771905aff366
+MD5 680e0e6411ce897faced99c9a842b004 ChangeLog 1067
+RMD160 b1cbf9e9507554abf3410f7ab6cfd29c3814f4b8 ChangeLog 1067
+SHA256 0c2429f9a6c655eec4753f4c1f1e3d844e211d4cec4d3bf0375e771905aff366 ChangeLog 1067
 MISC metadata.xml 505 RMD160 f2fa2c8de86e9ade0dc4f877b1d196ac68b92e5c SHA1 0f12c05690d0dfcb666e902d7993b7ef0775a74e SHA256 dbc8cc4c1391bf4846f2aa70d6598bc4b40a28568d3cb36e0a8ff8941eee9b23
 MD5 6ad88c9ce6796f4a6edcdc994135f94f metadata.xml 505
 RMD160 f2fa2c8de86e9ade0dc4f877b1d196ac68b92e5c metadata.xml 505
 SHA256 dbc8cc4c1391bf4846f2aa70d6598bc4b40a28568d3cb36e0a8ff8941eee9b23 metadata.xml 505
-MD5 9ecd6913936da62c55e691e4123d3f4f files/digest-trnascan-se-1.23-r1 69
-RMD160 17b1f3059afbeab54361bf7932f9f4f1f3e52cf1 files/digest-trnascan-se-1.23-r1 69
-SHA256 8104bb0f2914b4702578601adffb2a1e7c00b797fdbe94150bae8305b3be5222 files/digest-trnascan-se-1.23-r1 69
+MD5 edf32bcf41556e1b1b7549c9f3edde53 files/digest-trnascan-se-1.23-r1 253
+RMD160 868091c4b44c9129adacd6adb19b62e7121479c1 files/digest-trnascan-se-1.23-r1 253
+SHA256 e90dced767724a54387a7cf5210e9c9ed59494a8caa01adbb8a3a8896cb8f825 files/digest-trnascan-se-1.23-r1 253
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PJcz974XjDVpbkRAiozAJ41vlT3iIKphUgWfbcUJItXz5CQ5ACePuVT
+U1qrlXoJvEVCgv+Akm5gUzg=
+=WKie
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest
index 30a36f2e13f6..8c226b374acb 100644
--- a/sci-biology/vienna-rna/Manifest
+++ b/sci-biology/vienna-rna/Manifest
@@ -1,4 +1,7 @@
-DIST ViennaRNA-1.4.tar.gz 483047
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST ViennaRNA-1.4.tar.gz 483047 RMD160 31ce5f6e3f1adbd0c8e4759c243764523828a258 SHA1 fde493bfeeb443cb427bbe58b0d4daa446771ccf SHA256 8021ebe40d4fdf609fc9ad9aa7525736f69146666b6222d78d1016c20707522f
 DIST ViennaRNA-1.6.1.tar.gz 1149127 RMD160 37e4719e7ca03ced354976fa83f38d5f96776531 SHA1 afb35731c39893b17a21653a96ba5b3e39340934 SHA256 8036b6a562ec898dab4144cb5f18b42ff7c4290875572d05e7059b1ca2d5ddfd
 EBUILD vienna-rna-1.4.ebuild 2407 RMD160 1697ad7c9ea368107c2958429cc53ab35250d41c SHA1 0fabbd6bb11b7d1a5751245ec99a6c319e5a40a2 SHA256 c56b188f15a432c0749e075dab9cdc0a4a0631628b3992027d4718ed3dacd0e6
 MD5 3bb50b8cfbc48270128a17049473d2d4 vienna-rna-1.4.ebuild 2407
@@ -8,17 +11,24 @@ EBUILD vienna-rna-1.6.1.ebuild 1582 RMD160 ff7ac39b7188aba16ce26ed80187457acd83e
 MD5 5d374dc8496c8c6ef4973e2b92c2a753 vienna-rna-1.6.1.ebuild 1582
 RMD160 ff7ac39b7188aba16ce26ed80187457acd83e43a vienna-rna-1.6.1.ebuild 1582
 SHA256 2a5639eeb1e65f88689503c0d45a53af340416eaebb79253800d3f289bb77058 vienna-rna-1.6.1.ebuild 1582
-MISC ChangeLog 1922 RMD160 306a62785e0a9ecb36208433df40a4a46067ba7f SHA1 a9b5628c69cefc1dacadd239fce6b6a53606f6e5 SHA256 4106ad2b2663d6721b387b1e6535215cb8026d69c1ce710b522b9ac22584a40f
-MD5 eb96eb2e54fbf7302f1ec72bae15f9fb ChangeLog 1922
-RMD160 306a62785e0a9ecb36208433df40a4a46067ba7f ChangeLog 1922
-SHA256 4106ad2b2663d6721b387b1e6535215cb8026d69c1ce710b522b9ac22584a40f ChangeLog 1922
+MISC ChangeLog 2005 RMD160 57c7af9a9e132209a847163a22473550ed915171 SHA1 4633519fcbff95e9f03e367cc5185cc127963cc5 SHA256 0fb124bf12606927c94a7365cbcdbaa6d5e79cdd38901f7017149885592d9026
+MD5 342aa0ecfa2ac41431dfe7b0fdde75d5 ChangeLog 2005
+RMD160 57c7af9a9e132209a847163a22473550ed915171 ChangeLog 2005
+SHA256 0fb124bf12606927c94a7365cbcdbaa6d5e79cdd38901f7017149885592d9026 ChangeLog 2005
 MISC metadata.xml 1228 RMD160 8db8df2ec48d6a7e8dd4c592f7f4a9c7f8810cf9 SHA1 e46645ad44f1236a471a0ba79e08e4f6fe752dcb SHA256 7c558ba2568a5ec64654465c4c45784a32c4dccd6adf33518cf1f3daca2acd16
 MD5 3f7b19f43a1d86838c7947446337f2a8 metadata.xml 1228
 RMD160 8db8df2ec48d6a7e8dd4c592f7f4a9c7f8810cf9 metadata.xml 1228
 SHA256 7c558ba2568a5ec64654465c4c45784a32c4dccd6adf33518cf1f3daca2acd16 metadata.xml 1228
-MD5 f1a1d167e6d5e17687cee4ffb95c6044 files/digest-vienna-rna-1.4 65
-RMD160 dc33135ac5f3b27e7534b2ef38704c7429f31285 files/digest-vienna-rna-1.4 65
-SHA256 852d5aff2e9c90eaf97e1a98a678db51f39ba619d4f6aa58ac693baeb00b8bce files/digest-vienna-rna-1.4 65
+MD5 b3a63d2b3f485213aa60a04566f95b63 files/digest-vienna-rna-1.4 241
+RMD160 296ae4690b623bae89683468490008f96f34427c files/digest-vienna-rna-1.4 241
+SHA256 459b7bbca590c52d3bb60e3279fd55d121a43fb4f655e6e62af475430a597295 files/digest-vienna-rna-1.4 241
 MD5 eb193013e189f83146d7327383271be0 files/digest-vienna-rna-1.6.1 250
 RMD160 caf402e2c2f9d9cbf9182f4c79195bef66f39f53 files/digest-vienna-rna-1.6.1 250
 SHA256 cfbe4a4bc1a18ddbd121ff08e6b67fcaf93a7ca8e28068f4f837a8b53fc3adf0 files/digest-vienna-rna-1.6.1 250
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.1 (GNU/Linux)
+
+iD8DBQFF3PJ9z974XjDVpbkRAtTWAJ9WAUKwOEdctekGBuMLTQtrVArx5wCfb5ND
+NhZdMj/XVnvM8LO60LYc4sE=
+=mG/b
+-----END PGP SIGNATURE-----