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authorAndrey Kislyuk <weaver@gentoo.org>2008-06-17 18:40:09 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2008-06-17 18:40:09 +0000
commitaad38fbb889b999dffe35d3c51544667bcc43409 (patch)
tree48f19f5e93bc0de2ccebfa3cf352cd8330fecb14 /sci-biology
parent2.6.23-r13: Fixes security bugs #198997, #212136, #222331, #222635, #224647, ... (diff)
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Add gcc-4.3 patch, bug 227561, thanks to Marek Miller
Package-Manager: portage-2.1.5.5
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/mummer/Manifest3
-rw-r--r--sci-biology/mummer/mummer-3.20.ebuild10
2 files changed, 11 insertions, 2 deletions
diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest
index 91ee03035f05..862f1049c657 100644
--- a/sci-biology/mummer/Manifest
+++ b/sci-biology/mummer/Manifest
@@ -1,4 +1,5 @@
+AUX mummer-3.20-gcc43.patch 258 RMD160 4d04d0d51ac3a0e5281474acc6ede7f32e332bc1 SHA1 6a1d7928652fc118b11435265d99827836d36d83 SHA256 8496c80683bd938b56bf8308768f56c034a18fd7dbfc30df1a68119e53155134
DIST MUMmer3.20.tar.gz 3155446 RMD160 7e5fefef359c6a6ee49f2ebf14dc18caa19f48fb SHA1 68d6742de93d8524236ccf538f32ba8bb4edf7cc SHA256 9c7880b4ce25ef3c6bed9ccdc26f1c4d7e74eb0ef1ce403907790c0f96c0f260
-EBUILD mummer-3.20.ebuild 1532 RMD160 eee35166b22e2eec095dde61558a0b4ccbd66d0e SHA1 b9665b36bb64f1a00ffb2b88158bd9251cf0fe52 SHA256 c7d63566313682893f73093cf5aaba02eca5a2242d241986d49a7f96b7a84e9e
+EBUILD mummer-3.20.ebuild 1629 RMD160 ef974af5acfacf48e1792c7847faf4b032f600eb SHA1 f3d9e263c3afc8bb088f4affc4e043c674ffb708 SHA256 22442aa4a2a76c51c45ba8bc3cd47131576fd790d5c526321d2a5fce060fc23e
MISC ChangeLog 373 RMD160 60d5bdc9de309160d45167f4aff0c913e30bba5a SHA1 fabd66d870bffff0f858034732239d2e7bbaa8bd SHA256 81818fde3ced89fe8ad2068dd287efc3b01803a1b0385c4c864131979dc34c77
MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/mummer/mummer-3.20.ebuild b/sci-biology/mummer/mummer-3.20.ebuild
index 3f8a5ccd086b..40ff2524fe30 100644
--- a/sci-biology/mummer/mummer-3.20.ebuild
+++ b/sci-biology/mummer/mummer-3.20.ebuild
@@ -1,6 +1,8 @@
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.20.ebuild,v 1.2 2008/05/26 14:46:28 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.20.ebuild,v 1.3 2008/06/17 18:40:09 weaver Exp $
+
+inherit eutils
MY_P="MUMmer${PV}"
DESCRIPTION="A rapid whole genome aligner"
@@ -17,6 +19,12 @@ RDEPEND=""
S=${WORKDIR}/${MY_P}
+src_unpack() {
+ unpack ${A}
+ cd "${S}"
+ epatch "${FILESDIR}"/${P}-gcc43.patch
+}
+
src_compile() {
emake || die "emake failed"