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authorJustin Lecher <jlec@gentoo.org>2015-05-30 07:46:12 +0000
committerJustin Lecher <jlec@gentoo.org>2015-05-30 07:46:12 +0000
commitb6b32b2e8aac922a5c94e88d37bdb676f4c3099a (patch)
treeb4c41ea47ccf44ff0e3cff684c08ac6b40851870 /sci-biology
parentKeyword for linux prefix (diff)
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Version Bump
Package-Manager: portage-2.2.20/cvs/Linux x86_64 Manifest-Sign-Key: 0xE9402A79B03529A2!
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/ChangeLog7
-rw-r--r--sci-biology/rebase/Manifest34
-rw-r--r--sci-biology/rebase/rebase-1506.ebuild46
3 files changed, 70 insertions, 17 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index a3979899ec14..b7dc754cbbf4 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/rebase
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.159 2015/05/13 12:30:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.160 2015/05/30 07:46:04 jlec Exp $
+
+*rebase-1506 (30 May 2015)
+
+ 30 May 2015; Justin Lecher <jlec@gentoo.org> +rebase-1506.ebuild:
+ Version Bump
13 May 2015; Justin Lecher <jlec@gentoo.org> -rebase-1503.ebuild:
Drop old
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index b276e83e4a7d..27d9203f0868 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -3,26 +3,28 @@ Hash: SHA512
DIST rebase-1504.tar.xz 69726880 SHA256 70b02c6f4f51b091c31685cc6df5a0442f5fde258cd57d143b6c81a9d2f23190 SHA512 6b35b872bd5e1ee1a7cac72b7caccc03d13ce20e426a05e6c557353c067f6737b82de926dcf0dac5bcffe1c5ff72c76ce3e237d2df7044a7dfb5e930316edc42 WHIRLPOOL 5c72ce616e70d1f47979e1335aa0a5ae22eabad59d5cede5446a2c499a5e6127c4dd99ebb9e9ef09bf3c4b7bf439647e9fadf3e1b782e898039560a96cf6b65a
DIST rebase-1505.tar.xz 70790908 SHA256 dfeee8c7ee81dcd352e5a18319cc9c34c7cade73ef2843c8e7bec96fac29193f SHA512 9f83e7286908036478f021f1611bc04258458a769ce0cb62d1316726f5d644ed7038869e5e12a896123a33f433063d598c36771c80d90d7998d26a7aa19678d3 WHIRLPOOL 8e8ce8e5882d2a09b32cc5526c97724fec9894566587e79804425dbd68d4eb65644bc86eab3054190529b285c821e94bab0b60723d33bbe91332c5b165f2a9c6
+DIST rebase-1506.tar.xz 68649464 SHA256 06726908e1bdea2dd31e0e1fce885192b1fe152009ab740cd2079d652bc2bc7c SHA512 5f3030f8212e2b63bdf4abd96e8004159e522d5a8d485eb5dc5b124f32abb1f5e9eebc91950975cd997110f2f9059c78c2851a6b3eb14e0465f72dd7a7a96dca WHIRLPOOL 1372a646a9a29b855535e188b954cc26041f692cc2d7b84cd906a5e95bc4b6bb94f96c2cd98494942685d18d9643fcb4b0bf9b292abbae9813358487fb3dd3c1
EBUILD rebase-1504.ebuild 1201 SHA256 46978a305a790201ff05a298086b664f1dceca74c69e396b60e1be6ad7317f3c SHA512 282121fab96714a969fdbf180d6ac9e2e5b97bdadf2abe89731b26651d802898bd79e07be1c5682a2866be80ee40df09aba9c980b6f24e38879b9360512732a7 WHIRLPOOL b1d3aba63144cc7ea7ecde4a2342b45c51ebefc8375edd275810945f44ff7d6d8ca6fa9bab2fbe623c5dff488bb84d869aa70afe52583ae68c5018ccaeb9a282
EBUILD rebase-1505.ebuild 1205 SHA256 adf5c61af8db25d04ddaaad232aa9010cf534965096272e75cd083462e469ed8 SHA512 67f87b3ef66f2c7410f18fdabf25834be053496f84ea063525853fae28e13c261b00f6736ce58aacb7b9a147c014e642da23c7ace463c7d5e51a56705a6ebd97 WHIRLPOOL 9ca5fdb7c29909cdcd9255e9ed66efa8e7a6133bb58ddacc76a6055842df17b8159d3cbe59e99d1c3f1061ba993f9f9058ddc460af9fa6721f61241a82e90963
-MISC ChangeLog 19994 SHA256 5cf4fc7fb1834a85df6066f7c8f56b770afe66e4da6230480c8e6011d4aab8c5 SHA512 1614630cb6b4304a5800449e18d344d029da8226525512e0748e3bf5ca837fed64b48ab5762797e51deef8b05861810f5c6fd20b922c07fd2523def248df87d5 WHIRLPOOL dfc0afe6cf8a3d9399bcef7acf6bb85775faf5e176fbf75da09ff2b505f93a8651b0af8001945782e96e2845725b26dcae841108b32bd15e23dc0b9974db7597
+EBUILD rebase-1506.ebuild 1205 SHA256 a53fcaead179aa6f5ad9fd1f5401a55c8ab03c69389c2cd46f0711758bcc0c55 SHA512 f2e5e217d02626d99c39d62f6eb2c9dcee907bcf568fa02d207306d60d22533e0e6a2ee13e021519d59e4b24cde1379f3e5f08d086e6d2bc8d4e7dc7ec89a407 WHIRLPOOL 26906d7bc0267b6298c2e3514d021c57a92dd6595360e429f3cc1c5bfc5285972ac3b4b806a71995bac17a4aacf2989b164ef9c21740dd86ba60f97775a907fe
+MISC ChangeLog 20106 SHA256 72c807d55324d06c51c35e3c44243a734e500ca4b67987ae3adcac7e8524847c SHA512 189d58d89afca68afb654f664519033cb367204042cb64d65b098b2993302b821b76ef2c5376923ba3fb8953395bd6515a968105ca52f3348acf52c859ebc059 WHIRLPOOL 2d581b4eb64ee69aa197ec6b1385496b9107788d0b297829e69928124076184a70550caea9f5111f1e5ddbd6c7c06418413f7b300c1790ebae87177708deb4c1
MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
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-Version: GnuPG v2.1
+Version: GnuPG v2.0
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diff --git a/sci-biology/rebase/rebase-1506.ebuild b/sci-biology/rebase/rebase-1506.ebuild
new file mode 100644
index 000000000000..7b1a3d21ed29
--- /dev/null
+++ b/sci-biology/rebase/rebase-1506.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1506.ebuild,v 1.1 2015/05/30 07:46:04 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}