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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-21 08:44:44 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-21 08:44:44 +0000 |
| commit | ebbb9842d96ea2f3bc07b3928f9da6c2686f6bcd (patch) | |
| tree | bd7b11191fd2c02edbb56a73945e68f6ea7247df /sci-biology | |
| parent | Version bump for new development version of mesa. (diff) | |
| download | historical-ebbb9842d96ea2f3bc07b3928f9da6c2686f6bcd.tar.gz historical-ebbb9842d96ea2f3bc07b3928f9da6c2686f6bcd.tar.bz2 historical-ebbb9842d96ea2f3bc07b3928f9da6c2686f6bcd.zip | |
Remove static linking, bug 273344
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/paml/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/paml/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4.2b-r1.ebuild | 48 |
3 files changed, 56 insertions, 2 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index b923e3fdc55a..3798dc8cfb96 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/paml # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.5 2009/04/25 23:08:33 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.6 2009/07/21 08:44:44 weaver Exp $ + +*paml-4.2b-r1 (21 Jul 2009) + + 21 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +paml-4.2b-r1.ebuild: + Remove static linking, bug 273344 *paml-4.2b (25 Apr 2009) diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index 292d0f0d484c..10caafd166e0 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -2,7 +2,8 @@ DIST paml4.1.tar.gz 2865301 RMD160 44e5eb18eb9a168c6d2f090ff45462e07234bc07 SHA1 DIST paml4.2b.tar.gz 2664576 RMD160 49465de70e9c973bd269c2808f96ce7cccc4c2ad SHA1 db9e7ce2623049665b7e3a38e14c6f69ad15ac66 SHA256 2ee29961b4e7f07983e01c3587ff5a345ba7dfefaa85352f0c9e71190f8187f8 DIST paml4b.tar.gz 2380479 RMD160 4772ee6c736cc80cc299086c3f18446c22316321 SHA1 adbea6d18d3ea7f87ec37f14a1fe9cabecd1075f SHA256 2b8ebb8f276a822f7589fffe54ee31e170577b811e256536649c793e57d5a94a EBUILD paml-4.1.ebuild 1159 RMD160 e92d3c17407d5362b4438749c3d0d21eaad34337 SHA1 c848a2aee7e7fd0bfbde46b95899a5f84c7e58d6 SHA256 552630b699f130fa154eb719eecccc3a5ec58bfc398344aa3d54ca270fee4aa7 +EBUILD paml-4.2b-r1.ebuild 1170 RMD160 9a03b6e6eb277919a2f0a9f9c2c938911085fd33 SHA1 7bbb6e8f26f83b61ebd9bf5ecdebc721c83c53af SHA256 036f85b9125c04211d599b0de85a15ffab0218a4138d22717d883d4bb2b95d14 EBUILD paml-4.2b.ebuild 1074 RMD160 74c8996cdf57530726918d0ed4ec9f54d202a4d1 SHA1 e351c0f49a31f6770e9c0f084363adbcbbc66f7f SHA256 f622ccd2730086b353584330ec67e34d430ff2c95e9f463910a524cd178dfb45 EBUILD paml-4b.ebuild 1098 RMD160 aae656e556014013603f048c7bfa950cbf668e61 SHA1 a3326fc7c9f0409116dc00395241b749d043dc7a SHA256 7d0a9eec0b66114a6e1a201de8e5909f84dfd74b57fc81e3c76d247582b55d13 -MISC ChangeLog 928 RMD160 65b5f4ae843ad84b6829a893293b6a5ba6d01d98 SHA1 f231af494e1c5e31bb40052520218c3358c8c0b7 SHA256 52c23192247b26c522b1ebe1a92f95e21746ae53d926825edaed57b3858628e6 +MISC ChangeLog 1066 RMD160 4bafc47bb6c2b8ec9f0388d773900622b6062d48 SHA1 884d8d3aac99c0454df6fde9383161a256dea61e SHA256 7fc4a89f532418c923e9adba0a663deeb9d7c34d6b17786ff5c36aa75fbf1cbb MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f diff --git a/sci-biology/paml/paml-4.2b-r1.ebuild b/sci-biology/paml/paml-4.2b-r1.ebuild new file mode 100644 index 000000000000..5159fee6c399 --- /dev/null +++ b/sci-biology/paml/paml-4.2b-r1.ebuild @@ -0,0 +1,48 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.2b-r1.ebuild,v 1.1 2009/07/21 08:44:44 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs + +MY_P="${PN}42" +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" + +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + sed -i 's/-static//' "${S}/src/Makefile.UNIX" || die +} + +src_compile() { + cd src + emake \ + -f Makefile.UNIX \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die + popd + dodoc README.txt doc/* + insinto /usr/share/${PN}/control + doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} + doins -r examples/ || die "Failed to install examples" +} |