Updating remote-id in metadata.xml

Package-Manager: portage-2.2.20/cvs/Linux x86_64
Manifest-Sign-Key: 0xE9402A79B03529A2!

36 files changed, 368 insertions, 216 deletions

diff --git a/sci-biology/amos/Manifest b/sci-biology/amos/Manifest
index e6b22d0873ad..7c03e244ae6d 100644
--- a/sci-biology/amos/Manifest
+++ b/sci-biology/amos/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
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 AUX amos-3.1.0-goBambus2.py-indent-and-cleanup.patch 1057 SHA256 6dba8f9c13ebabb5aa55c8b6ec71a015315662d00ee749df96e6715b9de45736 SHA512 5d2a0d4b222a23f30db560937b1c0e447f61dc786e097b259696fa41dca1e57a17a1e684bbd9fa9ddcee1334f7e6e3a91ccb7567d4fe079c3bdb3bb54034d11f WHIRLPOOL 3abec572fa4384f7b4d60aa6cb5d3da945e9e78ab462757945e55f7a64440023a229a08ab40b861d9823d7694e5f92683459381865757f9ef284c228ac3409a2
@@ -7,23 +7,23 @@ DIST amos-3.1.0.tar.gz 2094268 SHA256 2d9f50e39186ad3dde3d3b28cc265e8d632430657f
 EBUILD amos-3.1.0-r1.ebuild 839 SHA256 6169c6235f84b49f283e1df0d1d029643bea3952f030947c6d146bbbe1c4445f SHA512 ada506e6146131743404f69626d78bd6ef733519e2d634599a95fa5141d3094e3b342248c980d788fc218fbbe850328bee7fd64840a19ad5fe68bee0f3e44303 WHIRLPOOL 350038932081cd2d517e295687032bab48982a119b6924674ae9302cf45c8419ce764cf1d95db98c33d5e4635913714e37975be6db9fe8436df735d728141ac5
 EBUILD amos-3.1.0.ebuild 653 SHA256 2b497be87eef143697927bd2f06c149087cfedbb4027ca25c7e1e200cd9cc4c3 SHA512 25f206269a55131916670577a9cd7a4bfcd049fd289a2ef28841cd7edac9196c4c660ea83bcec6658635e7cc3ac6a2362ab059937bad80548fd38226f28d918d WHIRLPOOL 1c594fae25ad90eb8edd656dcdbfe12920d54c3543027c15cd8ae3484a7b3120294b795f17e35ebe72d9ee3d2e9856b3a49df4fb09b03b95819f3df396eeec4f
 MISC ChangeLog 2903 SHA256 acc84b2bce3b80f1badfbd7f077aa6ce126153381202ee7216fc690d71e6ded8 SHA512 4aed01fa4327bf98f4953d3c4007c4b2d2cf97d269f94733233134c21785ba356f915fe907019f862869e79edee801e3d4f4daac0f59feb18cab5e05c87870a0 WHIRLPOOL c7a8ac94dd18417292579f2a4b482877ce64050b2a263a8f0f30db94f36f800949216871e4726773335679c36df3581b189390b4d1280550490001f39343fe0e
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
+MISC metadata.xml 244 SHA256 2af00725f717ff8c0e57b1a7062e69dcc8d0c3701eddb08c0448dcbf6b823666 SHA512 32924cbc07148b21cbc7beb7cec3853fe0271253518216d55121ebb152a446ff805fa3db510abc3fa110a752a479c7de200c4888537e2cedcf362aeedf25a266 WHIRLPOOL d97dcb9936235cb361e8649166a45a16a01b3f4a47fdb4c860d8e45974675ad9df246d0c3f3267a1cb2af97ca7e259d74ec418106131f108e51d55481ca0b5f9
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diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
index f17a827e3101..a73ee9189a98 100644
--- a/sci-biology/amos/metadata.xml
+++ b/sci-biology/amos/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">amos</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index 8a7e61fee19d..f3158e4302f3 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -8,21 +8,23 @@ DIST bamtools-2.3.0.tar.gz 539446 SHA256 288046e6d5d41afdc5fce8608c5641cf2b8e670
 EBUILD bamtools-1.0.2.ebuild 865 SHA256 28f29f02a2ae970cbe2929e71bb566eaa12c865d94429857fcb5dc2e30d6fbb5 SHA512 5654a0e2c9c6a88ea0894ad218caf57853685a5ceb32661c1ef25f8405f14aa87a26ca34cea88293c6ff1115f2269fdee1bf9a58ac7cfb9b38874557ddb3227f WHIRLPOOL 915c84863356b62503c4fae5d5d8475487cf34095ed92fdca391ab49326456065253b48ac182e5ec7a9eb69e16d284173c2caebd4b06b3c7a399bb89ff1ab831
 EBUILD bamtools-2.3.0.ebuild 754 SHA256 a3f52d5593dc61b0e662c675f8495ecb65106e7df8094ce3e26b1f887fd78774 SHA512 0e794cb31b51e1db3ce737334b81125c621b128ca878c4a8507a67bc61e8ca521b1f17695726eacafff25e6ce1d2527b272b476b8ec7086e1d16d902d338ba72 WHIRLPOOL 0f9af9afc8da4c80144b8223b69f6f6c8a4bb3c3266d8418745ecaf3552e7264df8d9bc5e470b192d7d1d24cb3381a8c78b33afd98976a2382a06ce064b77c59
 MISC ChangeLog 2233 SHA256 ef7f962abd2e9877dabc290266685ac5e02a67eaab0a797d9bc7579ec290d317 SHA512 beca82b599829c681d5a8b81cc5c473205ff8199a97e1bfcad8b58a0e67247023bb8e6f3c87f493c46910c33729a2a0bf10369fdf3f251846a7dd38797d54f89 WHIRLPOOL 7a511f4808aaf95e48ed54ed6c4b84fa6ea7190d1edbe738b84e163ab05c408cb81e4cec864c3042d35cb6f681169103df7987cce8559607813dc9bd7c602578
-MISC metadata.xml 587 SHA256 12e5a588b0eab0985e42b69a8ce0e10ac95da487eda0a3ff40f72b2dd1c846d6 SHA512 00238b407808cc61efabe242bb239769bcb269bca104c77a6e05b1918baf90ab839fc1a59e3d30577ee27c8268662f2b85ec6b7a4769e66d39458eff98d1d88b WHIRLPOOL 533c493254ff6252e1cd8b06fd1f1a30da9fa036ea7ed931d73477d25a10875f5d7e31233c2b330677f4e7ae6cb29d62838156522f13c8d35431fe1c4f597ee0
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diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml
index 22b4d909e601..f2c00c1fdd0c 100644
--- a/sci-biology/bamtools/metadata.xml
+++ b/sci-biology/bamtools/metadata.xml
@@ -8,4 +8,7 @@
     <name>Martin Mokrejs</name>
   </maintainer>
   <longdescription>BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files.</longdescription>
+  <upstream>
+    <remote-id type="github">pezmaster31/bamtools</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest
index 3f5548b246a1..71dcdf7bda3e 100644
--- a/sci-biology/bedtools/Manifest
+++ b/sci-biology/bedtools/Manifest
@@ -1,26 +1,28 @@
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-Hash: SHA256
+Hash: SHA512
 
 DIST BEDTools.v2.16.2.tar.gz 978293 SHA256 f5f5c864eb3f465ac7fd5fa651e2e4dbc0cd8d9198367148c52f3be3f46c2772
 DIST bedtools-2.20.1.tar.gz 4213348 SHA256 b5401810f8b12b683575f0119521dda64ff2f0a59faa308357405c4ae4e328d3 SHA512 b5c27601365a2126c58492791a52a262c874073cc1626bb1e38545ccf6e3594d12d2d2116304374b3446a588611cfd410c8ff166170823071b33c444c9fd36a7 WHIRLPOOL b768a7e064444d5d0434aea5251e132d68fbeb580783034c8e327666eaace0307febc80e9d6d3eea2f0f648263ce0ac836fac7a676586a6e6a8ec4daf39e6a84
 EBUILD bedtools-2.16.2.ebuild 804 SHA256 b880a55acd2703f1d5164a50f1fcc930ac0ec5e8d60e15afcdb8a6e62bc08b7e SHA512 a24b22d93a8dcfe509ac273483c2285bfedf563abe4bed294526376221d27c07fd4e9b70303a370f26fcefd8ba78e85a8506f37b92eb9084b5580149d213ba2d WHIRLPOOL a735441eaccbe10e859d044705ee39789af0d2a94f6d8700e988bec3db8ef179e6334288d549fe0eaa7a94a711ed8fdd0877262e03d66cbb1eed76cab3f4e8f4
 EBUILD bedtools-2.20.1.ebuild 818 SHA256 a38740b65c94b65f7bf5969b751647e01bdfce2979f8e2f24f2c9fc0935037b3 SHA512 9d870754a607b1514ca15a9f25ef220949ed6a6b3794976a7f407a611a2e0b05affbdf6b811e4d55327c57a7da0edc4d7da32b79ad82f046967cd3af2d120ad9 WHIRLPOOL e32de1d609fcdbfddfb793341a2f655514bf0612129e7e3ec933d1840aa9e18cc9a2b25586aba4a69c9e087dc91993adb86df048c2d976118ca7487dc30b0487
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-MISC metadata.xml 499 SHA256 c9f5280f3c73993684403b6f0d237377ccb5ad9c901ec76537f900a44badad49 SHA512 2c63143e4aad1587662af120c2ff32aabff4d624b1abc8673edc4ace0561732d1b79d08e6a5a9b8b23e0083464679346c9537bdaf955aebf4dbd8af5e4d06a01 WHIRLPOOL d1cb1edc31bb4345771879be52a6e8e341cd3ee45a4ea7ac105ea69eac6638a6535b3d9e06dc15055e6925dd0882a304f96682bd02d6398f28b2ab4704910cb2
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diff --git a/sci-biology/bedtools/metadata.xml b/sci-biology/bedtools/metadata.xml
index d841c4bcb406..6edffa4a6dc3 100644
--- a/sci-biology/bedtools/metadata.xml
+++ b/sci-biology/bedtools/metadata.xml
@@ -12,5 +12,6 @@
   </longdescription>
   <upstream>
     <remote-id type="google-code">bedtools</remote-id>
+    <remote-id type="github">arq5x/bedtools2</remote-id>
   </upstream>
 </pkgmetadata>
diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest
index d8507a57502a..d1e931e95370 100644
--- a/sci-biology/bfast/Manifest
+++ b/sci-biology/bfast/Manifest
@@ -1,14 +1,26 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
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 EBUILD bfast-0.7.0a.ebuild 945 SHA256 4487e6f196cbd729413f66fb21d8f7ffde483d58f41cddcf1412e772a04052f5 SHA512 09c6d81b12065014aab9fe213f6f2e73670075f99b8eb03902bda8c5d13ac08ed75b78f7187d4e2d421a749641d594a3eb7f1f62d979a6a7802d38efbbeb1e73 WHIRLPOOL 7387d272635fc6057f085ac806c91bce3a39750f8b482761ffe3af292caf85394f1ecd91562e783881b848bd0885201bce5bce1f66bd7f89a3b604047fe9edc3
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diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml
index f17a827e3101..45107864e217 100644
--- a/sci-biology/bfast/metadata.xml
+++ b/sci-biology/bfast/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">bfast</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest
index 2ad15de2e795..8b4ba7c25b23 100644
--- a/sci-biology/bowtie/Manifest
+++ b/sci-biology/bowtie/Manifest
@@ -7,21 +7,23 @@ DIST bowtie-1.0.0-src.zip 7710572 SHA256 51e434a78e053301f82ae56f4e94f71f97b19f7
 EBUILD bowtie-0.12.8.ebuild 1042 SHA256 6a046f6367ef3f1a13e64328691c683209114ada08734069b402f0f51f236829 SHA512 11c72bb3165862499d97dc1ff6bfee68efc19bcb01e807d4470e156b2dc802dccb9b88e0011fedfe8aa1df28512cefec7ea8ba18c33a21c2df19021883df66d5 WHIRLPOOL 992c246fa35ffbe2ae8fdf3aefa458fa756d6b4e36513a5d1254c6003ea2b1854d5a334ff251c20bd87b28b354b760d1629d24f410bb93089b6c0774e2b32c39
 EBUILD bowtie-1.0.0.ebuild 945 SHA256 fc97310809391000787ea456f7959d31907ecf2fb23990bd6a9618460b7b145b SHA512 6fc13b97e5bfd25998dc10ba92beb97d2a0f307bf5f7cfef62f94bf1becf06082df7734baf211602d43b0fb14f594f02cef637134d0dd7028edf9c3cde0a2893 WHIRLPOOL 1bb3ef753b94e7a026383a2bcff9997ec3e074b23e1bbfa45badc4b4762203aa96445aff0e8c095f15eeb9466083190679410788d3f33c8f9793f22e6f9957e4
 MISC ChangeLog 2855 SHA256 dacfc3ea38c770f70cc02d3a2a62f704b0d77ae35ec787ce53c2ddcd133a149a SHA512 61687de55717462065994d9062d9bc822b6017e85260ee68c7844794f1a0468f10aa1c46e5a89345df316943d1cff775a71469ba182989130abce86e438af712 WHIRLPOOL bdd1b06d50f740264b1eb7d447c9909a336ff8332e971f45b5d71fae1da27cf43cdec6e97506d2d51f06f93bed4ccb6d24c978c4410669b4681626f96808df7a
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/bowtie/metadata.xml b/sci-biology/bowtie/metadata.xml
index f17a827e3101..e493417070fb 100644
--- a/sci-biology/bowtie/metadata.xml
+++ b/sci-biology/bowtie/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">bowtie-bio</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest
index 6174cc4fd37b..762008c69751 100644
--- a/sci-biology/bwa/Manifest
+++ b/sci-biology/bwa/Manifest
@@ -5,23 +5,23 @@ AUX bwa-0.7.12-Makefile.patch 911 SHA256 b67d36d5fe755f572cf8b5998e5dedc0545e89a
 DIST bwa-0.7.12.tar.bz2 184599 SHA256 701dcad147ae470d741717a72c369b338df7f80bff4bb8eee8176c66f16d608c SHA512 3ea093b861c1596d20b1ee0336468b66e52bc9f26e3d0bcbba0ddccc7fe9b1af2c7e1ed2a4e1366fe93fec348152becc126d5f4685dae54f05e6c582488b3abd WHIRLPOOL 4b8651dedf2e09980850e7212fc2a77dc86b06f708af2077cff28cc843858b15825a203e3e02e7728418e9eb539004404f7c4b234c1f65de6a7b7dfe4dcfd1d0
 EBUILD bwa-0.7.12.ebuild 748 SHA256 04f6e20b53787c373c637b3d47a7f7166c41b6db9cf3931ebcc793f3868037ae SHA512 17db5bbf3eaf7a0a8ee0d2b635cadaa5a77c8476edb8c16a6fc37b99e8ac3c0c0553a8c887191d3a7f66aa54de1e281ce981125ae0f77a56357b85730141ffb1 WHIRLPOOL dd778d1b05199f59657dfe71b0a9c4313c4160b73ea2bd68e683dcf0a910f251a9663033173941ae7010b9794cba2e0b53f12c48b64b59710f4b3b0869461b6e
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diff --git a/sci-biology/bwa/metadata.xml b/sci-biology/bwa/metadata.xml
index f17a827e3101..97a33fbf5c42 100644
--- a/sci-biology/bwa/metadata.xml
+++ b/sci-biology/bwa/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">bio-bwa</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/diya/Manifest b/sci-biology/diya/Manifest
index 638258167184..431f5f335baf 100644
--- a/sci-biology/diya/Manifest
+++ b/sci-biology/diya/Manifest
@@ -1,16 +1,26 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 DIST diya-1.0-rc4.tar.gz 386706 SHA256 13f7dd4dd7f96143948587884954e337552d7491347c2c174e786824880590c7
 EBUILD diya-1.0_rc4.ebuild 1349 SHA256 f0fe3058caee6ad80d16f7753d6eebfc680cdce5158548f29a42b6077fe679ca SHA512 d10dd09634f40b06514f90151f931dfaf796c28c520c4f9fbe16c70d07832463e659455cc5314e6d945740fbfe93af72102a50840f6e7d01453a6ab7b5bddee9 WHIRLPOOL 64db2cc78de5b5607e23d8cc04e77fec00ae4e8c7611849fa878177035046786ba9747f252d8e65bd4c5dbb06e728fe85db504748b534d6bc63baecbadf313f4
 MISC ChangeLog 589 SHA256 4a47d8a2e72f6a813afd872cccb1d18759a877121aadd30a2cee1fc3862cbb25 SHA512 4e8e6dff796f223c9413bac3af000aa10661534027bf0b9f138c0639753b5fb6a44f7caf9765b7129956953f0a7fcbe6d9ef313d5d8bc42bc51b692706cc4f94 WHIRLPOOL 84f18afb0e09994b8ed8bb7412be0c266cdd54037b58bdd54c13cd0a14b33fe1ae33b695c5622ed00e0008b7f7b04ef2f60583692381c904dde6fcf6c2fc648f
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/diya/metadata.xml b/sci-biology/diya/metadata.xml
index f17a827e3101..d6b9de8b20a7 100644
--- a/sci-biology/diya/metadata.xml
+++ b/sci-biology/diya/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">diyg</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/maq/Manifest b/sci-biology/maq/Manifest
index 16e416ac3922..c01592fdff76 100644
--- a/sci-biology/maq/Manifest
+++ b/sci-biology/maq/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX maq-0.7.1-bfr-overfl.patch 527 SHA256 ff7521f696d4deb311f3dec07997bd8cce068749369d6cd3d3e65fb6cce19e56 SHA512 953587e9354f2d3a070aae67ee999105b96678b2b781b9fbe8416d040a594d1db2ed6e7de0516cd29c2020de5129bbc26b78b7bfa5a258ebb5cb9fd4715f8bcf WHIRLPOOL ab41e0d61d75caf9780920eb87bd2def0b6b1006860b60d43d5fa8f96dc6a1956147073b2e6b186a64cb977c055a4e6133f12eb7d925aecf7c650a1cfdd3fed7
 AUX maq-0.7.1-flags.patch 799 SHA256 f1949b063ed015182e403668dc19466d079eacc6d351d11cc5d099d2aeeb18f9 SHA512 f13d8af7884691f2d8c8e9bd9d370c5ca12e863aaf05e156a964ba88053d86dcb63f24169fbc3b2a9264423510061c26d88904b87ea8aeb8bf446b51e190aedb WHIRLPOOL 6091105a0f1606bc96a5da85026da7dc4acf4d9900e9d26f64e353486eb3e1fc90862c5b16f3709a19019ace12313bb60af4e7603a4c8c49716f878c96486cfe
@@ -9,11 +9,23 @@ DIST maq-0.7.1.tar.bz2 368645 SHA256 e1671e0408b0895f5ab943839ee8f28747cf5f55dc6
 EBUILD maq-0.7.1-r1.ebuild 936 SHA256 dbe88df55ff80b3ea2359302eb3e1c6824ab5186a5d2d5d815c9d8a97b651414 SHA512 7914806eb5fbd92f91cacdf71bde1279a0b6f487d1868f95bbfdb6c87e6556e77db2f8926dcaa037c23ad2ecb78ff3878df0dea8a2f2aaa80daa35dbec4aaf9d WHIRLPOOL d8c656051e8a436cdd17be9fb7020034ee18ab003031186754295e3859d875f998b90baf1902b0414579b5074cb982586922f0563935653cd0397ba28e93077a
 EBUILD maq-0.7.1.ebuild 695 SHA256 4ecb74414902b3522e3076e3dee11618a255f42ca485e0d47fdaeb0705c9a5e2 SHA512 7f7a5d5acd672ef26669be09a63c83377a45ca47d8866d054e4b0022d591ee7723a5c71c24ec2ff363cf3ed4fee9d239ce59843159173fae6fd11c7d707e2534 WHIRLPOOL 58e0f135ade304f134ed74eba85820fd63e5a0c9c6bd05f3a8b5c1a90341147b646224fb10b7577c2a02d23a6142f7082ab6af2e9dc13738f8917efc89a95d93
 MISC ChangeLog 1593 SHA256 11a721662c24da57a4547df5500eb4f67e45ba788b9c12ede57861992cadd88b SHA512 dcc4634336b513ef01f06c269d65c2b1ca55b6cc0436521cf552d6bdd7cafcb29617cba552ac0cbcbfcffea20154aa1c92b68ced341f3d9a423d9c9d7db2d99a WHIRLPOOL 55d882686d50124d8251fa3101361aa180feaf7db0dd254208e6661c7d83a3cee433bf12cb64c45ea2f0d6ae659e877a70b36088dc5b099a0c6f5aead25609cc
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/maq/metadata.xml b/sci-biology/maq/metadata.xml
index f17a827e3101..79ebcc09421b 100644
--- a/sci-biology/maq/metadata.xml
+++ b/sci-biology/maq/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">maq</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/maqview/Manifest b/sci-biology/maqview/Manifest
index e89f74c3669d..34cac6f10e95 100644
--- a/sci-biology/maqview/Manifest
+++ b/sci-biology/maqview/Manifest
@@ -7,21 +7,23 @@ AUX maqview-0.2.5-gcc4.7.patch 575 SHA256 c5474002f6624d688fce6fea700334d0997198
 DIST maqview-0.2.5.tar.gz 383410 SHA256 156794f114a00bb455a47ccefa50782441dc1b9668b6e7439ce0674060c085cb SHA512 40bed0a1005ca96fdb12773cd9c22ddc926fe722c64652031609a17a50ff725a3dc117d51f4f27eda68b48861da78427469aaedff744f29921236b486396aed6 WHIRLPOOL 0ba5a15a1317b4bb78458b9e282348983be9e2c30980aef4e35a9f5dacfff57226eaa4403fb0b9d9d448ba033409d548db224ed544ad365226a8fb59be8b743e
 EBUILD maqview-0.2.5-r2.ebuild 714 SHA256 11924996ec25e52db535679f2416a4b965936906f9359fddd5813db713401166 SHA512 0798fab72bd914ed9b532ee6fdccfd5af8ae51d247e64a28e931c986d4a60fd221c282b3c6ab7b06ebda56585a8da413eaa306fadf91047f06ea5894bfbb1275 WHIRLPOOL 7ad60b5e0dd2ce0507da8ef8ba2ab2b177f37afc95fa46d28e26341fabb38482c9b6c8e385cd0a4b1ad0cb0d28cf5c89dc942b8a1cb724f2545f461f80345cfa
 MISC ChangeLog 1735 SHA256 7a4e5bbd005f3618c3e7d610da81bbe06577af3e840eff90098da8dcc753a09b SHA512 4f350d0d119bf3b8394584e4f306529a91be264ded36af621bac3d971cc27e8b83da78679b9fe0afb54991bde515b2ddb6b0fc560bfcd6d0695c5a13a89d0147 WHIRLPOOL f6350b623c52b046a37e73eeed2b027f6dfdca84d8cbf49de989499c9f62add437363d58c39b524e0e9818c8f2548bd1c3e60f380e6f18b746a8ac38e1008214
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/maqview/metadata.xml b/sci-biology/maqview/metadata.xml
index f17a827e3101..79ebcc09421b 100644
--- a/sci-biology/maqview/metadata.xml
+++ b/sci-biology/maqview/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">maq</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest
index e64d7975845c..e5ee7631d6ae 100644
--- a/sci-biology/mira/Manifest
+++ b/sci-biology/mira/Manifest
@@ -11,23 +11,23 @@ DIST mira_3rdparty_06-07-2012.tar.bz2 31656 SHA256 53cbbb9d57e2fa51706b3f1d05562
 EBUILD mira-3.9.18.ebuild 1979 SHA256 14a5fa4f5d6659fbad572a10de8d4f11340ac111a8e0b681818acceab94792ea SHA512 f63805561a477dd9878a3c397aeefb4bb0f393be5f14006c938e63d97b5f1093c62797838d2f15cccd7af91060fa56ed8fbdf307d358f5d12c141de6041ddc0b WHIRLPOOL 5fa51e5e01c71130269581faed7cd5e457e7431340fd7aef5ef60541c8d5f27144922adb2ebdf345e95fe7c3a6dceea0f429b22ba5d73b39783e7d530706bf3c
 EBUILD mira-4.0.2.ebuild 2287 SHA256 573e276f2090fa15f625f64faf818312d55accf58b8b816334f18ad6606eb83f SHA512 46271a03642784f4b334485888605f1f7a984dbc938421d17d9b72f85f064901d312084a1002f3f5373cfebf4730cbbacf2ba494565a6bf6cb12943d47e45dc6 WHIRLPOOL ce5e660e5a261b6c6c0a63183089688dc0a4953782750797aee1cb6121666de28e0a3334b3fde1cdf5f7fe59c737f51ab02d53bbbc86d6625e57062c7cbd452f
 MISC ChangeLog 4159 SHA256 795db09cc52f03375feebfaaefa50ec6a76794b6915833b2807c6da2a79d522f SHA512 830dba63d9b61a8d5300b1dcdb2cf4622b68135c9390dcf2a18735b10521c889e45e5c9bb4ec056ff1197abbf0d04ce3fbe5d52909fd5d7d54e509dce607db20 WHIRLPOOL cd08a05526315fd19a75d70c38aca63cb05eeb10a73e17cded7ee8b7dc21def9864eddd4e21dc807c00d920e0669246122a142299a27ef454e708930994d30df
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
+MISC metadata.xml 254 SHA256 9170858e782067fbb6f9662af5c6b4b420df47bdae5a21177eefae057e87fcef SHA512 f47ce3d3094cbe66b4d0cc9a4841e8deda056f4de9ac00528da64f98ed488c21e9dd80ac4c44412b1fbc8f97eecd39cf84b4fa2f7bd328ee712d6d94e43cae38 WHIRLPOOL b7d7efa81b514511e2761d52493dbe4f841aca874d4218f9ae86cdef065b9d6bd7a8e5c6bfc9d3f575748621c7c82079d00f9ad76be795e70cbf91f13fe759e8
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diff --git a/sci-biology/mira/metadata.xml b/sci-biology/mira/metadata.xml
index f17a827e3101..a2c7c1a0a6a7 100644
--- a/sci-biology/mira/metadata.xml
+++ b/sci-biology/mira/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">mira-assembler</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/mrbayes/Manifest b/sci-biology/mrbayes/Manifest
index 829111f58e58..b20bba3ce4db 100644
--- a/sci-biology/mrbayes/Manifest
+++ b/sci-biology/mrbayes/Manifest
@@ -1,6 +1,28 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA512
+
 AUX mb_readline_312.patch 1108 SHA256 6d7566cbe59eee9881b41a21ea561fd610816df768bb8fda42ef4435c84f5f22 SHA512 0a169b8560853dbff87c983bf8220384dcf22f53106ce5711bf3b1fc76d8a9adbf1860618176dde65a8657abe3ad888521bf5485fc00d4014adf1acb7ba3f114 WHIRLPOOL 925581e97278d36cdbfa4c53ab47a331640cf0d57c912eee7567d28805875a15e677a283f7a941c851783057cd606165ebccd6360e4f705eae53b2bf8df0fa89
 DIST mrbayes-3.1.2.tar.gz 545968 SHA256 c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4 SHA512 2fb0ee7224cbb69c1acf2ffb0c6c8974f63002cda4f39a626eadf80fad9cfc23861f8c03f5545970f3a81e02093d62b6a0549ab7d7f7080557e91e21b2c3ee14 WHIRLPOOL 45c9750a1e3e3ac85a1085bcaf8fc5c108b730a3dfa2f9e8d81cea8720bd6f02815c3145c19ee6c369a43f4565c2b234ec81cd5721672abded17186264de2e3f
 EBUILD mrbayes-3.1.2-r1.ebuild 1124 SHA256 175d30c618d3611e1534c3ab9ea731c3ebb19642a02abbbd6370033603ffaa9d SHA512 33c671fb95795ffdf81e005ee760a7d13f14ae4206d5ff650f7f4351e917b8e548b15579d0cf7cb30a16998ce9e56c148ccc4e4c6de1447badcd72535fd2aa85 WHIRLPOOL 268df71d0ad1c55f1b54f6deb0d8c00f01f70450336788fd410aeadc579a410e753d8674c771d7c3b92d2fc556f4dcede7d5fb119b37107c6bea497e72f9220f
 EBUILD mrbayes-3.1.2-r2.ebuild 1460 SHA256 a3ef239dd96f7dad2c5982ee72f11fe18b22ff5234810e00c94e4490393cecb0 SHA512 8a63704b623ca7e7e31e0d65817be305ff5a28492cdc8e1bc061d7e49c00abc9ab6ef0f77ed52fbf4ef603532fb63a0ebb38d39e920c5fb919023abda1cb2b37 WHIRLPOOL 73a2a660314bfd5366a1dfaf4a19c1cca320550a036d7379c079277479c0f9fc94265c6298dd17732d4ea8e3748e38b6bf3d1defe17c77eb3a0083e3d561dc27
 MISC ChangeLog 3659 SHA256 624f09b69c5d303e7dbcceae7cf41a0a0961a8affdea23e3a70ee4e5c10142af SHA512 68cb1b6c4177abf3ed1dd339edbff99c87bb70e16d637588f9d76ef798ca501a148a0a6b751c3fcc5df9b1b28305379a3b4e157973e6bbbce7bb10eb5c9dbdf3 WHIRLPOOL bd446c6d7ee8dba16098c97f203a52450ef924862838ffad53b75db387a8547c258f43dc65a81fc576699d5c99239736f7837e46518c5c7e8a656119111fd1b4
-MISC metadata.xml 734 SHA256 37b58f5ff4f1b6082bfe8f58f6153aefd6af27147c35276fe366fca2b09418cc SHA512 588700dc2913045980003f911d69c6a9cd221872aae612f91c57770bf735f65a07550d9df10c444305a8d643d1d8c2c43f2bc9b1855f4a8ebfdcfa7ce3af33b5 WHIRLPOOL c178c044cd536641b4d519fcb69a61b258a460702fb11f8e80c48ebeb07203c1f55bf08b055c3a78a0f6becac891f1abb59bfbc1ac1c2bb4d081efaedc1c9412
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diff --git a/sci-biology/mrbayes/metadata.xml b/sci-biology/mrbayes/metadata.xml
index 9b0503f3a779..8a6a5b986dc7 100644
--- a/sci-biology/mrbayes/metadata.xml
+++ b/sci-biology/mrbayes/metadata.xml
@@ -12,4 +12,7 @@ impossible to calculate analytically; instead, MrBayes uses a simulation
 technique called Markov chain Monte Carlo (or MCMC) to approximate the
 posterior probabilities of trees.
 </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">mrbayes</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest
index e152349fa60a..34322ea09e60 100644
--- a/sci-biology/mummer/Manifest
+++ b/sci-biology/mummer/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX 3.22-ldflags.patch 590 SHA256 b30dfc0af0cf296b3fe11413cf4f9ac9d54ac7ae88dd42f8dda39c537fc76f21 SHA512 367834124eb0932585c136bf6fefe5993ce96c5ac66940d01e8425ac16cf1b564c487cbb1ac5225fcf177110c2d78e9a94f53d7dca07e146b7e2666e6fc3755b WHIRLPOOL 7d3961f6b70871ff3825effc2df7b75175d310588f1ce016aaaafd4885e39779b650383118ccba2b757d4819d39f6dc0e6623b65870c645c005559e1522cebfb
 AUX 3.22-prll.patch 1192 SHA256 aca40e446ceb0d1f774e55b23ff09a8f4de982b80142983b4ea3915e9258f9be SHA512 627667cd8ea0ab578669b4e5d94aba3f61b45dcf55ba2a23636e3f60447b9fb113ba9b3c471d069a271c790606c273ec1a1ad57f00d68d49bd4ceee12c96f1b9 WHIRLPOOL 9e9d900e224357715867b396cd916382402f58f2bdf87408d659202b69851d6c2b7d186645227dbb13c41a599bdcfcaf64433ef2be3701b02b9ee7429d8ed717
@@ -11,11 +11,23 @@ EBUILD mummer-3.20.ebuild 1831 SHA256 d30b9d867a5a61404771777ec96b600612f8611503
 EBUILD mummer-3.21.ebuild 1599 SHA256 31f9e38c96a541caf12165217679097c8c119c1be97dcb1aa98e4deaf5232036 SHA512 78e0959171264b382f83848bcfbdca16aaffa188a5409f58f712059aa4f5f6f0fa25265fdced7cf7b4e03cc586b964e6bc98d9b5c65359bdef97b7858acb8290 WHIRLPOOL 21de92576e79f4dcc33390e992bd97d1226eb15ea40ea5db2c506a0865f29e0c20fb759b807a46c7eaddf29f2ebaf9196392aae5d8c9a18150f81e639cd13361
 EBUILD mummer-3.22-r1.ebuild 1687 SHA256 ba65ba742848c79c115ad064d4551663be141c36fb777e02817eb5cdf249da4c SHA512 29c9168a66319acd41c529c684b5cd1a40e4b30b3109685055ed7ed578725e6bc58d5720639ead07239c16f0c15f38bb6bb7226597574076e4e8a04b44d896d9 WHIRLPOOL 81d7e19e6b38f9c25aa2d81a0c28ded08b2f39fcf246edf63ea704483c84a0f7b7471531b011501c4a549533644ca5ebc9c2e5aa1ff01584079ade54cd30f478
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diff --git a/sci-biology/mummer/metadata.xml b/sci-biology/mummer/metadata.xml
index f17a827e3101..f82b462e1f95 100644
--- a/sci-biology/mummer/metadata.xml
+++ b/sci-biology/mummer/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">mummer</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/poa/Manifest b/sci-biology/poa/Manifest
index 1e985a8f39ff..81d8d2cb6397 100644
--- a/sci-biology/poa/Manifest
+++ b/sci-biology/poa/Manifest
@@ -6,23 +6,23 @@ AUX respect-cflags.patch 464 SHA256 851c738b9ecfa567b21f3b551e6819b8ae05db02a3f5
 DIST poaV2.tar.gz 62612 SHA256 d98d8251af558f442d909a6527694825ef6f79881b7636cad4925792559092c2
 EBUILD poa-2-r1.ebuild 1036 SHA256 f61fa118aae25e15fccd50877647094ae45abb3324ca386a22fe8afe1edb6d60 SHA512 e2a036a6e07cc88e4cd9c00fb50af85900392e7a1e7de32ff1a81da7d5462b9fed8ad663dc62d5e1f60fa82eb5649ca5833c123eea15ec43fb186390eefc2812 WHIRLPOOL 995c8c0928ed8394d5327007cbed0d7edca2ed2cbe2823fdc7f93ff74b002afc13074f639184ebddb2f51e1c0de1c2016bf99a1d2be0986e94678707a0d7715c
 MISC ChangeLog 817 SHA256 1de38231da7348f93a4ce0a70e3777668cf3b276ef48a6da76dca4a4a1458347 SHA512 29ac954a78cdece0447a24cac32fc1cd7dceb68e9bbb6c0eed1caa285cfda16152f78f985f7165ac36ef2a1b82e4b92b590fb9c4efec5d0cf20aac55782529c1 WHIRLPOOL 603f706ededbd456b069ca1bcb5a7582b9cf632fd2ab8e9fd30f78d5a76cce74ee93c27c77a3289ad5ded467823dc4fd07f4fa89bc53c8da338e8f250b5e3788
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/poa/metadata.xml b/sci-biology/poa/metadata.xml
index f17a827e3101..65027f64ec24 100644
--- a/sci-biology/poa/metadata.xml
+++ b/sci-biology/poa/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">poamsa</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
index 6258ff5fc530..0358f0a60ef0 100644
--- a/sci-biology/primer3/Manifest
+++ b/sci-biology/primer3/Manifest
@@ -8,23 +8,23 @@ DIST primer3-src-2.3.6.tar.gz 1667573 SHA256 2ff54faf957f0d7e4c79d9536fa1027b028
 EBUILD primer3-2.3.5.ebuild 1143 SHA256 18411b87193a04d66405f1f92cbde3ff5cc71e293d2ca8ab071a7c44fa735b28 SHA512 3e46e924eaae11833a8701631b23d4a38c725ee4ab4d3e24ec0035b3b2274b6d3d6743fd61941df9edbe67650f8b9fcc360c0efc750cf949e3379ddb9f5d62e4 WHIRLPOOL a84e004777283d80847e3a804da5d33d991bcc8e7ecefbb648e34148f39e82616b9aa5ccfde143b26b89791f2e0345a849685b97c1539540899a5843a4690e13
 EBUILD primer3-2.3.6.ebuild 1156 SHA256 6057281bd575e8d0b746b61d6da06416efe85c81c56fcabb4f9803d7aeb0f936 SHA512 2f5780aa6830a67b3cd07e4fac2026bcd1f612d25940607af73c4ef652e521dbdb3417f84192511629fd322054432b86c0b1dc434964e1bd09529d61f1e66bce WHIRLPOOL 8b9d0689209391c0ec0b888f068f6eb3b3325c4ef40786f51b3f8e4bf62d1b83348516a869b5d70cac11f76fb60b43a0153e88ccb971efebdef1cf30f0abaffd
 MISC ChangeLog 6556 SHA256 7a6c4648e46858dc397f13486669207f9be2a1c6f90250e62421a9a4d9a48c44 SHA512 bb93c369c2b9403143e8c7e9a4776c93c6e54a9ee078e05c66793183f21c5497b72dd65578144fa716f4c1cd4c927f399aa9f1f593773a1fee4a37ffac2b541a WHIRLPOOL fef5c33af9feb026a5a9f8ebf0f2dae804b6fe8e0120d829e4434ccdc2b2b8a34f956b816dcbd3a1cd26daf98bcbefce6d92663a7b27e4391e3c02af702e8a7e
-MISC metadata.xml 626 SHA256 7f92fdb9d901cce63f02bce075366ea0fcd34c54809c6cff6a5074671e528c97 SHA512 cd1df947da6ce9bfc424658af5149a431f9f049938d74b0ff83e5fe585829006dc4c4707833e7b4308242fed6e92b3c83263754aadadb2e22c76cf964c32fc25 WHIRLPOOL 5a8f088e9fb2a29b73cc6ad8da1808314f38f04e611b96a76de1054c290fbb662177b757c8a198885fa03c0f881376cebe95906606279193d2852f443176ef04
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diff --git a/sci-biology/primer3/metadata.xml b/sci-biology/primer3/metadata.xml
index a72b3a5d05f6..1fbadfaf3b77 100644
--- a/sci-biology/primer3/metadata.xml
+++ b/sci-biology/primer3/metadata.xml
@@ -10,4 +10,7 @@
 		user-specifiable as constraints, and some are specifiable as terms in
 		an objective function that characterizes an optimal primer pair.
 	</longdescription>
+  <upstream>
+    <remote-id type="sourceforge">primer3</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index e9cb02a353f9..54bcb8cfcd97 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -1,5 +1,5 @@
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-Hash: SHA256
+Hash: SHA512
 
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 AUX samtools-1.0-buildsystem.patch 1672 SHA256 fe82984a2475ce4666bd386bb6f1ab9aff4e6402dc02e671171f41ad082345c1 SHA512 b75a9c6a57fa5f4c4dc9eda529eb500f1828c6e0910922ac34869c0972661a4fa51a65b83a153905a090b4f67e0bb7a9316ecc33b04a09a46c74d2bd67c84cf6 WHIRLPOOL eb72243b5e2376df4c417e0b171eb3f71c11ca842014fc72f75463a4bebde11771484049a12650e9169f1c4ba390699af99ebf63d6459b4cc673195b273bedcc
@@ -17,23 +17,23 @@ EBUILD samtools-1.0.ebuild 1488 SHA256 f1b8623d24fc3ce95b39ba1f66a334d9a0df1dd88
 EBUILD samtools-1.1.ebuild 1780 SHA256 7939d37f2dfea1a0f190a57bc02374a8787d4e6a21325677b6c175bc42e19561 SHA512 14be9b8002b38f2fe6f7f0c01629ada05539cba20476436f2de691cb8a73f8751e66045e81dc5aa01cb1fe7d2971cb660e6cc66c9191eba71bc3d87741b3a7b5 WHIRLPOOL 63e66aa4a04932f3cb5269d45d2d746ad712a9302dd1efb0c4a39cdaaf44e6c93a088429ad1b86533928897ed5f12a81a72a1d011123baacf29049850e109de1
 EBUILD samtools-1.2.ebuild 1804 SHA256 1edae996713074dea4dba5f3fe1b981fd1f5a46c9faaca5aad77403458840949 SHA512 0e7967658953f4650740c66cbc3ce4ca3505ed5a4f0ecfda4da9eb6d2d440c9ce1058b4d4d421dba33af3902fadfe86cb90b2f2691d4c5b5ed29e97721eb6a2d WHIRLPOOL 95b8965d68f7bb89f49c13599d35c9e688209106a89aff113198270ebb141f9ee12806f37fc52ee37a73f1710715a891cfd24a06b6f9ebe8f0bf637d70aeaf82
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diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml
index f17a827e3101..74dc02bc9826 100644
--- a/sci-biology/samtools/metadata.xml
+++ b/sci-biology/samtools/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">samtools</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest
index 3582498226f2..e3c560a3d610 100644
--- a/sci-biology/sibsim4/Manifest
+++ b/sci-biology/sibsim4/Manifest
@@ -4,11 +4,23 @@ Hash: SHA512
 DIST SIBsim4-0.20.tar.gz 32118 SHA256 ee02ae5f678d6843cf3ba267140dfccf9648a60d1f01263ae70d405723a35463 SHA512 3802520095e83d3c691804b661696095a4198c4b2a16385c55ccdc8e4e836f82cc9c2251a5d37cb5918c2ee80aeb81737d751e6b065fbfe9c64f1aee3e0ea0c8 WHIRLPOOL b6117192170a7c8b6bcc441c8b31b392410116d25045203ce33e5274a0a65608de408626df5a29fddbbbe34973869b055603defd58d06cbc6240925556b63282
 EBUILD sibsim4-0.20.ebuild 750 SHA256 06e750ef41095a3880d20a346ce8ad39f3d97e71340db25b8bc68cf3f48df634 SHA512 3896ef2ae1ca87a5001cce36a62beec3f30008a31566eb8be974df9bf28ef498395d35460b0cb1e8c9bb7e3544e2c36d3e9ebadc7c89a9af94dc7444d219a80f WHIRLPOOL dbd157a600392a8a6f8a3284c0b0bfdcab297fb559f19c7319bc17213656af1bd1159c78e6610fd4044e50891ce1dfb03f6cf1dedcb6f39b347cbcf441d0ae81
 MISC ChangeLog 1077 SHA256 21794dd8153ff64ed6c4f7a4bfe62341008b891272e58dfbc3c7557912882af0 SHA512 df27a124758be1a2eae4f599955190aa19af76f5d66acc3c6a55001b6e6191b35923b15e819e690888713956e4989090a37f22097b740accb4431ecfcf5d34c2 WHIRLPOOL 938b2fff3d2775393ac4d7bd610cc00083e2f5879aedca081e1def10ef335957de548f2af2605ce592e13af9bb42fcb169833f671eda615d582a44a2ad6bf0ae
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml
index f17a827e3101..cfcd5be131d0 100644
--- a/sci-biology/sibsim4/metadata.xml
+++ b/sci-biology/sibsim4/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">sibsim4</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest
index 1e2e4522a688..d1c87b656a16 100644
--- a/sci-biology/vcftools/Manifest
+++ b/sci-biology/vcftools/Manifest
@@ -5,23 +5,23 @@ AUX vcftools-0.1.12b-buildsystem.patch 1406 SHA256 6c0d478c890b36778d5c7110f212d
 DIST vcftools_0.1.12b.tar.gz 631374 SHA256 9d2324512e9f1237d5cece74ba63965eb43643e9eada8685afe8217760a20a91 SHA512 803790c8ddbfec1b006a5ce5c6d1c2e0f468978eb96d5ee61d38b863df5752f8b89e0c936803d690491e2d1a898d237ec8772c01b7e9d1a138c610f3a1decbfd WHIRLPOOL 3198f10cd97021f1878b4e2ab1cda3c0038061d301a99a36b1482c8d7bcc5e706f01d0bf3a46634d48dd2e741700032870da2a1dfe7a65022e318d4dde4c8863
 EBUILD vcftools-0.1.12b.ebuild 985 SHA256 8bacd096999eed27ce612b1c7e189a02fc219fd64e9a345dada3d9bc7d30bfd7 SHA512 d8ecf67cda09558848f35b3ad533e83856944d2b712fcf0c3d53385446a6747dd9e50eb043f7b8fe7186087315cd0ea81f0c54a7c43cf1eef3b2d628d78c7268 WHIRLPOOL 1b5343fe25e4763160f8e15cdfb398ccacfa1d90764c6f193cc9b3d21122d4c6862e77ffae3be6bee5f68ade466c6bf2f2e7ede3edbb05ae1996540f6716d470
 MISC ChangeLog 1487 SHA256 c87f01e46cefe44f2a84676c7e48130dc2ed8065437bb9a66b47336a9881c976 SHA512 f6bbb15623533764f13192f55fad78dcd41fdbb9eab73d4b089022471e0a001728285677d12a889443b83b370b768f617d84b4ca692105abdcc23ac9cb8e40de WHIRLPOOL e300a50ed4949b7051479e0a0b744b57e5cef5c3bf2c624d05a473c29749c394f1b3f8d9e50370dbb8143eb616fb4c1b9227a48c77aba0b0e68a6fd7d6e7b3d2
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
+MISC metadata.xml 248 SHA256 b1c2045fafa6006bb5685e8e37e9eaf2fe6076afa98219a5fa8c5d1f481c4bf1 SHA512 66a9e5d4c0ccea6aaa8852031804ca053d22c5f3d3d97e131b2dbd713a1263f4ccc1d6aca24d4fcfc1f7314ce5d356ae6f8cf285053453a22f64e8d0fd1073c4 WHIRLPOOL 9a7b9f7ef40b5a847b9607d2035b32656553ab0da8325589a734a4e8f7c3cb7d4bec6c31c4abf94c0200378067c1d0b95673d7441e653ac830344be81b4bc660
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diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml
index f17a827e3101..c45e9f4dea06 100644
--- a/sci-biology/vcftools/metadata.xml
+++ b/sci-biology/vcftools/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">vcftools</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/wgs-assembler/Manifest b/sci-biology/wgs-assembler/Manifest
index 78c39ae0b255..bfd04bf5ca18 100644
--- a/sci-biology/wgs-assembler/Manifest
+++ b/sci-biology/wgs-assembler/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX wgs-assembler-7.0-build.patch 10279 SHA256 23c0a916b3af24f4c12fd2c40f5e7c1559749ddf3d29f1f06c89dd27ff0fd462 SHA512 77e432319cb279d188ab74edda822f6b4dda127f1e5f1d75febb6fe0533b66d5bfd066781f1ff5d4d0d8f832c491d31ec470653b9c36b29d8280b5786783c5b9 WHIRLPOOL c964cc3b3b9394251b2701d8cdb8373184509a4ee62faa44cad5df11d0dff90ab03224d2538c888414cadeaac09a512128262e66791d3b4146c2d072d7f21052
 DIST wgs-5.4.tar.bz2 1876180 SHA256 698b22bd63fa2bb4fe7f164a92c92f82474bc8fc64c37704258ebb3bdc86d7bf
@@ -10,11 +10,23 @@ EBUILD wgs-assembler-6.1.ebuild 2018 SHA256 0436923e40a6069a0e84fcb52cf21c83146c
 EBUILD wgs-assembler-7.0-r1.ebuild 1841 SHA256 6f4cfd925fa5dc8accb215d05c517937364211eb29614919b05ee8603d0e4d39 SHA512 535d30ff92ae87357af7d231813881832196604fe2b55ba391dd645990c2d6d1295c752983bd598c3f7206e282f6480ef8d8b89cc557027431d491c60e94f202 WHIRLPOOL 7f97ea0c5beb7e4eb052558af7df4ddc4251822b9e1a0475079f3508698801633d8a7762b308274ba024576c7545341d293ed9724063b5e729d4e393f0f12ce3
 EBUILD wgs-assembler-7.0.ebuild 2019 SHA256 0271aeeb47d8cd0bb887c4f91b716fd7907a6c5fe595a74c7672ab4929f23d49 SHA512 5b9ecc412dd241ce5fb8236cffba972e7fe57b3e43c0213040d570496a1c8e33508f919f17a8a9a80f1dbbc4406409da6d75128be0a1b0ed40232ef71773c9f3 WHIRLPOOL a527bccae5bddc7f816b058a2f6972563ddfb09b8c8289a7404f6382c55c7ebec2e87897c9d27a7960db13c432c5e8af3bfaeaed953f83ce5382dacd618878e6
 MISC ChangeLog 2127 SHA256 92fa1def396841cb4e895cc59a0a8351099efe39b3432ef034dae491bb4cd4ff SHA512 8dc7f0416773cf810ec1a5315045829322ba4887e2b0714965d8859cf1a847fa9fb37b7f5102aaec7b4e19f63f18df2ac50e8503aabb37287cce29f8f9ddfcd1 WHIRLPOOL 9429ff376104ae8b2e219a93fa99d6ec52b39e7994ca464dc7ae72e4d6ede9110168769b1a919591bce14d3c12864ec75da2da2415129d6aebc6effd2325680a
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml
index f17a827e3101..8e4a74368071 100644
--- a/sci-biology/wgs-assembler/metadata.xml
+++ b/sci-biology/wgs-assembler/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">wgs-assembler</remote-id>
+  </upstream>
 </pkgmetadata>