Initial import from the science overlay.

Package-Manager: portage-2.1.4_rc11

5 files changed, 102 insertions, 0 deletions

diff --git a/sci-chemistry/massxpert/ChangeLog b/sci-chemistry/massxpert/ChangeLog
new file mode 100644
index 000000000000..17657ec895b6
--- /dev/null
+++ b/sci-chemistry/massxpert/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-chemistry/massxpert
+# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/massxpert/ChangeLog,v 1.1 2007/12/30 00:53:45 je_fro Exp $
+
+*massxpert-1.6.7 (30 Dec 2007)
+
+  30 Dec 2007; <jeff@gentoo.org> +metadata.xml, +massxpert-1.6.7.ebuild:
+  Initial import from the science overlay.
+
diff --git a/sci-chemistry/massxpert/Manifest b/sci-chemistry/massxpert/Manifest
new file mode 100644
index 000000000000..81287ede7be1
--- /dev/null
+++ b/sci-chemistry/massxpert/Manifest
@@ -0,0 +1,16 @@
+DIST massxpert-1.6.7.tar.gz 17049882 RMD160 7a6f9022b28c53e4347cf10833fee0b7f6d4c81e SHA1 63f1e4d9c91a06d71b3e487a679afcd7a935faa0 SHA256 0e35b86a7fb082d13773fc5bbad2671eda604e6774482ed77ea4fbc351904407
+EBUILD massxpert-1.6.7.ebuild 1417 RMD160 da6603f238710241fd39eb3744cdb0461308230a SHA1 0402034438b2438075d4137d1600d68d874af061 SHA256 1aaef7f9ca86b9196a945e152d9e8ffd702a12c1fe94229816f8dd57a5f2965f
+MD5 3c58eeb63e88444e6077cd053e01f1f0 massxpert-1.6.7.ebuild 1417
+RMD160 da6603f238710241fd39eb3744cdb0461308230a massxpert-1.6.7.ebuild 1417
+SHA256 1aaef7f9ca86b9196a945e152d9e8ffd702a12c1fe94229816f8dd57a5f2965f massxpert-1.6.7.ebuild 1417
+MISC ChangeLog 368 RMD160 92a7be43b47f0d519e14e695875632952ed6bb33 SHA1 d927d5ee21e67e9384b06d3282e5b6fe99799850 SHA256 f59a14a057879361a507d6e3e3d0258033da96ab5f350497a6c97eef4c5fec7c
+MD5 f6ef7ee5757512ceef617f12558464e7 ChangeLog 368
+RMD160 92a7be43b47f0d519e14e695875632952ed6bb33 ChangeLog 368
+SHA256 f59a14a057879361a507d6e3e3d0258033da96ab5f350497a6c97eef4c5fec7c ChangeLog 368
+MISC metadata.xml 365 RMD160 f819adbd1efea7dd2d1fba08f3fb01e4960e792d SHA1 e9d9957e1c508402c18c973cf71a7df0bdd2db4b SHA256 323186d59527262058a473eab30e1c4b52ca6ac1a5c75b216b7bb167d2f0a014
+MD5 85da0015401fb87c6a08dcfcf13c4fe8 metadata.xml 365
+RMD160 f819adbd1efea7dd2d1fba08f3fb01e4960e792d metadata.xml 365
+SHA256 323186d59527262058a473eab30e1c4b52ca6ac1a5c75b216b7bb167d2f0a014 metadata.xml 365
+MD5 876e187cf5aec7c42666b801432172ad files/digest-massxpert-1.6.7 253
+RMD160 fc17c02a8c68b933d727fd9365fed59443443c2c files/digest-massxpert-1.6.7 253
+SHA256 709313469d5b4576aee6d212c01646decf62611a9ef652a9437a99ed29fe8add files/digest-massxpert-1.6.7 253
diff --git a/sci-chemistry/massxpert/files/digest-massxpert-1.6.7 b/sci-chemistry/massxpert/files/digest-massxpert-1.6.7
new file mode 100644
index 000000000000..fe8c585203ce
--- /dev/null
+++ b/sci-chemistry/massxpert/files/digest-massxpert-1.6.7
@@ -0,0 +1,3 @@
+MD5 bb1939b8826a71823ee48b42de5bf561 massxpert-1.6.7.tar.gz 17049882
+RMD160 7a6f9022b28c53e4347cf10833fee0b7f6d4c81e massxpert-1.6.7.tar.gz 17049882
+SHA256 0e35b86a7fb082d13773fc5bbad2671eda604e6774482ed77ea4fbc351904407 massxpert-1.6.7.tar.gz 17049882
diff --git a/sci-chemistry/massxpert/massxpert-1.6.7.ebuild b/sci-chemistry/massxpert/massxpert-1.6.7.ebuild
new file mode 100644
index 000000000000..7ce76b311e8b
--- /dev/null
+++ b/sci-chemistry/massxpert/massxpert-1.6.7.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/massxpert/massxpert-1.6.7.ebuild,v 1.1 2007/12/30 00:53:45 je_fro Exp $
+
+inherit eutils flag-o-matic cmake-utils
+
+DESCRIPTION="A software suite to predict/analyze mass spectrometric data on (bio)polymers."
+HOMEPAGE="http://massxpert.org/wiki/"
+SRC_URI="http://www.massxpert.org/downloads/source/${PF}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=">=dev-util/cmake-2.4.7"
+RDEPEND=">=x11-libs/qt-4.3.3
+		x11-libs/libSM
+		x11-libs/libICE
+		x11-libs/libXi
+		x11-libs/libXrender
+		x11-libs/libXrandr
+		x11-libs/libXcursor
+		x11-libs/libXext
+		x11-libs/libXt
+		x11-libs/libXfixes
+		x11-libs/libXau
+		x11-libs/libXdmcp
+		x11-libs/libX11
+		sys-libs/zlib
+		media-libs/freetype
+		media-libs/fontconfig
+		media-libs/nas
+		media-libs/libpng
+		dev-libs/libxml2"
+
+S="${WORKDIR}/${PN}"
+CMAKE_IN_SOURCE_BUILD="true"
+
+pkg_setup() {
+
+	if ! built_with_use '>=x11-libs/qt-4.3.3' accessibility ; then
+		eerror "qt4 must be built with the accessibility USE flag."
+		die "qt4 must be built with the accessibility USE flag.."
+	fi
+}
+
+src_compile() {
+
+	sed -e "s:/lib/:/$(get_libdir)/:g" -i CMakeLists.txt || \
+		die "sed failed"
+
+	tc-export CC CXX LD
+	mycmakeargs="-D__LIB=$(get_libdir)"
+
+	if use amd64 ; then
+		append-flags -fPIC
+	fi
+
+	cmake-utils_src_compile
+}
diff --git a/sci-chemistry/massxpert/metadata.xml b/sci-chemistry/massxpert/metadata.xml
new file mode 100644
index 000000000000..e087bd63a982
--- /dev/null
+++ b/sci-chemistry/massxpert/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+<email>je_fro@gentoo.org</email>
+<name>Jeff Gardner</name>
+</maintainer>
+<longdescription lang="en">
+Prediction and analysis of mass spectrometric data for proteomic projects.
+</longdescription>
+</pkgmetadata>
+