Perl Bindings for openbabel, writing by rei4dan, #212212

Package-Manager: portage-2.2.0_alpha28/cvs/Linux x86_64

6 files changed, 138 insertions, 5 deletions

diff --git a/sci-chemistry/openbabel-perl/ChangeLog b/sci-chemistry/openbabel-perl/ChangeLog
new file mode 100644
index 000000000000..08d09c143f48
--- /dev/null
+++ b/sci-chemistry/openbabel-perl/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/openbabel-perl
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-perl/ChangeLog,v 1.1 2011/03/26 15:52:07 jlec Exp $
+
+*openbabel-perl-2.3.0 (26 Mar 2011)
+
+  26 Mar 2011; Justin Lecher <jlec@gentoo.org> +openbabel-perl-2.3.0.ebuild,
+  +files/openbabel-perl-2.3.0-makefile.patch, +metadata.xml:
+  Perl Bindings for openbabel, writing by rei4dan, #212212
+
diff --git a/sci-chemistry/openbabel-perl/Manifest b/sci-chemistry/openbabel-perl/Manifest
new file mode 100644
index 000000000000..89a4c8d809b0
--- /dev/null
+++ b/sci-chemistry/openbabel-perl/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX openbabel-perl-2.3.0-makefile.patch 1765 RMD160 debf4cd445a8d997beb5686c57ce5723e4ed547d SHA1 7947bd8046523bbb87b471308874fd709b0d5b91 SHA256 07e7d4a02fe656ca74ea4bb9e05388010e5a2f1200d7a8ef688b87edf90d1359
+DIST openbabel-2.3.0.tar.gz 14321281 RMD160 96dafa3c2aca544f79e08b5617ab0da845c28a16 SHA1 408a4bddb7f052fd89c57ea51b4204b721856b16 SHA256 6dadcb256d83b1f2e616fa1853dd1afadb23550a20d1c118b406231a09f861fb
+EBUILD openbabel-perl-2.3.0.ebuild 1307 RMD160 d5d2ad3593aeedb9a134c28176d22ee7337d057d SHA1 7673ea0ae65424d49dcbb7911c9b041b8d0916d5 SHA256 73be0e69efbce1111db514b27d521fb3f255771f4f77b5143f77c3f2e411e4c9
+MISC ChangeLog 462 RMD160 5acedaed6c6b19b15d00c1e3763b263922045088 SHA1 207b810eebdbdd8ed6c87d109c043d5e21f99fbf SHA256 09912a856edc6896896e6b8753cb63cd93a637e0264a09737021ac031c6cfab8
+MISC metadata.xml 547 RMD160 685c790d772d3d340cc6506f9ddb0157f0bb1ee0 SHA1 621e3849da03363d9daf831344d275f0116dd95b SHA256 9ab03099df4d364cf5a858fe8127a0069cebe1bab7bf696ed8723c025048b6e6
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diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch
new file mode 100644
index 000000000000..034b6090777c
--- /dev/null
+++ b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch
@@ -0,0 +1,28 @@
+ scripts/CMakeLists.txt   |    2 +-
+ scripts/perl/Makefile.PL |    1 +
+ 2 files changed, 2 insertions(+), 1 deletions(-)
+
+diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt
+index bf2527b..3c45111 100644
+--- a/scripts/CMakeLists.txt
++++ b/scripts/CMakeLists.txt
+@@ -223,7 +223,7 @@ if (DO_PERL_BINDINGS)
+         COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/Makefile.PL ${openbabel_BINARY_DIR}/scripts/perl
+         COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/OpenBabel.pm ${openbabel_BINARY_DIR}/scripts/perl
+         COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp ${openbabel_BINARY_DIR}/scripts/perl
+-        COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc SRC_DIR=${openbabel_SOURCE_DIR} OBJ_DIR=${openbabel_BINARY_DIR} ${PERL_EXECUTABLE} ${openbabel_BINARY_DIR}/scripts/perl/Makefile.PL ${PERL_PREFIX_TEXT}
++        COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc SRC_DIR=${openbabel_SOURCE_DIR} OBJ_DIR=${openbabel_BINARY_DIR} ${PERL_EXECUTABLE} ${openbabel_BINARY_DIR}/scripts/perl/Makefile.PL INSTALLDIRS=vendor ${PERL_PREFIX_TEXT}
+         COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc make 
+             DEPENDS ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp
+             WORKING_DIRECTORY ${openbabel_BINARY_DIR}/scripts/perl
+diff --git a/scripts/perl/Makefile.PL b/scripts/perl/Makefile.PL
+index a3a2116..44ad27d 100644
+--- a/scripts/perl/Makefile.PL
++++ b/scripts/perl/Makefile.PL
+@@ -32,5 +32,6 @@ WriteMakefile(
+     'CC'        => $CC,
+     'LD'        => '$(CC)',
+     'INC'       => '-I../../include -I'.$cmakesrcdir.'/include',
++    'DESTDIR'   => @ENV{"ED"},
+     'OBJECT'    => 'openbabel-perl.o'
+ );
diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml
new file mode 100644
index 000000000000..78a71057d3ed
--- /dev/null
+++ b/sci-chemistry/openbabel-perl/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<longdescription>
+OpenBabel is a chemical toolbox designed to speak the many languages of
+chemical data. It's an open, collaborative project allowing anyone to
+search, convert, analyze, or store data from molecular modeling, chemistry,
+solid-state materials, biochemistry, or related areas. This package enables
+to access OpenBabel library from Python programs.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild b/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild
new file mode 100644
index 000000000000..41f94e0ea36c
--- /dev/null
+++ b/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-perl/openbabel-perl-2.3.0.ebuild,v 1.1 2011/03/26 15:52:07 jlec Exp $
+
+EAPI="3"
+
+inherit cmake-utils eutils perl-module
+
+DESCRIPTION="Perl bindings for OpenBabel"
+HOMEPAGE="http://openbabel.sourceforge.net/"
+SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+SLOT="0"
+LICENSE="GPL-2"
+IUSE=""
+
+RDEPEND="
+	dev-lang/perl
+	~sci-chemistry/openbabel-${PV}"
+DEPEND="${RDEPEND}
+	=dev-lang/swig-2.0.1
+	dev-util/cmake"
+
+S="${WORKDIR}/openbabel-${PV}"
+
+src_prepare() {
+	epatch "${FILESDIR}/${P}-makefile.patch"
+}
+
+src_configure() {
+	local mycmakeargs="-DPERL_BINDINGS=ON"
+	mycmakeargs="${mycmakeargs}
+		-DRUN_SWIG=ON"
+	cmake-utils_src_configure
+}
+
+src_compile() {
+	cd "${WORKDIR}/${P}_build/scripts"
+	perl-module_src_prep
+	perl-module_src_compile
+}
+
+src_test() {
+	cd "${WORKDIR}/${P}_build/scripts"
+	emake test || die "make test failed"
+}
+
+src_install() {
+	cd "${WORKDIR}/${P}_build/scripts"
+	perl-module_src_install
+}
+
+pkg_preinst() {
+	perl-module_pkg_preinst
+}
+
+pkg_postinst() {
+	perl-module_pkg_postinst
+}
+
+pkg_prerm() {
+	perl-module_pkg_prerm
+}
+
+pkg_postrm() {
+	perl-module_pkg_postrm
+}
diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest
index 0f8eab0bd3a5..4ec21729f852 100644
--- a/sci-chemistry/openbabel/Manifest
+++ b/sci-chemistry/openbabel/Manifest
@@ -6,13 +6,13 @@ AUX openbabel-2.3.0-test_lib_path.patch 637 RMD160 08d27b2de2aa7c323808373d5874d
 DIST openbabel-2.2.3.tar.gz 6624028 RMD160 4234baf9773aa6f918bb3fa5a25cab5f657f857e SHA1 e396b27551a106e001ca6c953181657a0a53f43f SHA256 eabc8bdbd68431f441b6b40adde0861b2e99750efd21bbb4870ee0a233feae46
 DIST openbabel-2.3.0.tar.gz 14321281 RMD160 96dafa3c2aca544f79e08b5617ab0da845c28a16 SHA1 408a4bddb7f052fd89c57ea51b4204b721856b16 SHA256 6dadcb256d83b1f2e616fa1853dd1afadb23550a20d1c118b406231a09f861fb
 EBUILD openbabel-2.2.3.ebuild 2150 RMD160 66fec659e0082dcecf1facd29defb3c443219aef SHA1 fafcc1825e11d4fb3419a095536944cee1c92bf9 SHA256 ef0c0a8fa67d92f0c78b4c5749da5fa73566f95d20e9eae11fb65aeaeab6f66b
-EBUILD openbabel-2.3.0.ebuild 1485 RMD160 47f942e48706e99da87fca138366a2cff9575127 SHA1 28a3c6e1cfd84a478e76cf96e417eda0487ad5cf SHA256 8b9fc0efc30de7a5a96ff92a170fddd5de5937d1fe58f653d864931855d6ffe0
-MISC ChangeLog 7675 RMD160 01ed354939aeecedfd4bfdcc49883bf5b5417af8 SHA1 97f68e72506846a331786389aebda95136643d25 SHA256 1e1fb88299d9a5a60a3d6218d449ef3aa5825a0b13cf635c2f9bc31ee46724a8
+EBUILD openbabel-2.3.0.ebuild 1581 RMD160 83fe4a1ce226efef985edd775928be30724b402b SHA1 372f1c27fbf22244f1b953d82e0a7cbab455ccd6 SHA256 fa42db514f3774b43bf5c2d46b42d3f0164c5906cdb4bee67dd0e2a28c35ffc4
+MISC ChangeLog 7773 RMD160 c5ec4cb99a36435931aec44eded8a829e208fc45 SHA1 65887829a158a998414cf176edf267a24dd1acfd SHA256 1b6c9addb6e407bc56767bed2db706167070b26d8259e2d86ed0817ca267894c
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