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authorJeffrey Gardner <je_fro@gentoo.org>2007-07-31 22:23:46 +0000
committerJeffrey Gardner <je_fro@gentoo.org>2007-07-31 22:23:46 +0000
commit653d11f476f84a63ee95fc28dca84390ab75754f (patch)
tree3032944e886a24c9de7a715556e04b4e6447af00 /sci-chemistry
parentReassigning to sci from math-proof (see #138059 for reference). (diff)
downloadhistorical-653d11f476f84a63ee95fc28dca84390ab75754f.tar.gz
historical-653d11f476f84a63ee95fc28dca84390ab75754f.tar.bz2
historical-653d11f476f84a63ee95fc28dca84390ab75754f.zip
Removing unused version and associated files.
Package-Manager: portage-2.1.2.9
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/apbs/ChangeLog5
-rw-r--r--sci-chemistry/apbs/Manifest16
-rw-r--r--sci-chemistry/apbs/apbs-0.4.0.ebuild83
-rw-r--r--sci-chemistry/apbs/files/digest-apbs-0.4.03
4 files changed, 8 insertions, 99 deletions
diff --git a/sci-chemistry/apbs/ChangeLog b/sci-chemistry/apbs/ChangeLog
index 7534080f2cb0..dfa3fb3fe686 100644
--- a/sci-chemistry/apbs/ChangeLog
+++ b/sci-chemistry/apbs/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/apbs
# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.14 2007/07/18 17:37:48 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.15 2007/07/31 22:23:46 je_fro Exp $
+
+ 31 Jul 2007; Jeff Gardner <je_fro@gentoo.org> -apbs-0.4.0.ebuild:
+ Removing unused version/files.
18 Jul 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
Add apbs-0.5.1 which includes many bugfixes and new features.
diff --git a/sci-chemistry/apbs/Manifest b/sci-chemistry/apbs/Manifest
index 4a1398de93cc..19cba57fac44 100644
--- a/sci-chemistry/apbs/Manifest
+++ b/sci-chemistry/apbs/Manifest
@@ -6,13 +6,8 @@ AUX apbs-gcc4-gentoo.patch 1080 RMD160 88138dc27c2fa17e558dc3a5c8c41e52bd2f0309
MD5 c54fdb174c6ca236268f3fb45c3c837e files/apbs-gcc4-gentoo.patch 1080
RMD160 88138dc27c2fa17e558dc3a5c8c41e52bd2f0309 files/apbs-gcc4-gentoo.patch 1080
SHA256 9077f4ffc41a2af28eed4193a2e56d20b668e2bc280ca2740d3a8803e28c48d6 files/apbs-gcc4-gentoo.patch 1080
-DIST apbs-0.4.0.tar.gz 6490858 RMD160 259c89efed2296eb20af1f8076adc767ef35228c SHA1 f7a5aaefebb545b06f66cb11f229f959060e6c3f SHA256 d1f6637e10b3051e6f618abaa14063f8f9bafbbbad75058645866b606d708acc
DIST apbs-0.5.0-source-2.tar.gz 10171621 RMD160 31a00f89052cc32d0fdf3272c214f2145ac62067 SHA1 4d3376a62169e3965a2d3b49a2b4b1014bf7721e SHA256 5f99cc6141d34800cf9e93e0e23215b3f740f6e208318698e7011602e1630a08
DIST apbs-0.5.1-source.tgz 10952600 RMD160 d738f88252193dff64ca692d895d1359445d5eda SHA1 50d88392f4cf2cadf1627828aeffeb165ef49f0e SHA256 28828a56d474d644f1e0940b9f232c92ccf2bc123ae402bd70976cf018564903
-EBUILD apbs-0.4.0.ebuild 2263 RMD160 b287665785fcdff940d94d005876c72a27955ba9 SHA1 d856c8cb505b4f3ef5153e8f9d8b1f8bf89a7965 SHA256 94798fbf5df5b03159c99cb04bd37583a26ad3fc3175995b940dc1bccd284b86
-MD5 03bc4e9a44abebb169a267aecbc4bd4e apbs-0.4.0.ebuild 2263
-RMD160 b287665785fcdff940d94d005876c72a27955ba9 apbs-0.4.0.ebuild 2263
-SHA256 94798fbf5df5b03159c99cb04bd37583a26ad3fc3175995b940dc1bccd284b86 apbs-0.4.0.ebuild 2263
EBUILD apbs-0.5.0.ebuild 1757 RMD160 19f32781d4ee7dcc4d33d7f031c7ee65b434d2dc SHA1 1da670491ad35339d77d25595c0c2f849915726b SHA256 88d84d01c9a12a9bcd3f5c389fb03e817de84b90a8d2e076de4e6c0c00d49aa6
MD5 a4147a49a6e42a04656373dc991ebaba apbs-0.5.0.ebuild 1757
RMD160 19f32781d4ee7dcc4d33d7f031c7ee65b434d2dc apbs-0.5.0.ebuild 1757
@@ -21,17 +16,14 @@ EBUILD apbs-0.5.1.ebuild 1752 RMD160 bc5a3eb8ee7e58eca861dd1925675aa53fa769c1 SH
MD5 85caafffbe070f9a3058e690a7fa3b8a apbs-0.5.1.ebuild 1752
RMD160 bc5a3eb8ee7e58eca861dd1925675aa53fa769c1 apbs-0.5.1.ebuild 1752
SHA256 aaae3b73a567d0ff8ee36900a12864990fe71cedd55529df2d9e4cbb6053c5ea apbs-0.5.1.ebuild 1752
-MISC ChangeLog 2006 RMD160 4f2e34b1dd6d6b8196a74ed245ced03a2d9e339a SHA1 7ab6ed9618275ab870cf4b4382a87182f19d09a8 SHA256 118c741676476fdcee23819a71ccfccf862f448f8c67d01bfb4012952575e862
-MD5 b52cbb2e24587e178ac1df937e0f80e4 ChangeLog 2006
-RMD160 4f2e34b1dd6d6b8196a74ed245ced03a2d9e339a ChangeLog 2006
-SHA256 118c741676476fdcee23819a71ccfccf862f448f8c67d01bfb4012952575e862 ChangeLog 2006
+MISC ChangeLog 2108 RMD160 8744bc18e818e3091f593dd4152c670a50af16af SHA1 162c86f4891773a2d807c480deeeecffb4df3250 SHA256 4f57d34d5a8ba25675ffa88198134349bd21e4f5ca2db5890d4e7138a0fed58a
+MD5 e4db3605b8499af260fc4b5916b0ab77 ChangeLog 2108
+RMD160 8744bc18e818e3091f593dd4152c670a50af16af ChangeLog 2108
+SHA256 4f57d34d5a8ba25675ffa88198134349bd21e4f5ca2db5890d4e7138a0fed58a ChangeLog 2108
MISC metadata.xml 282 RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 SHA1 7f42dcea44641b8a77ab9644791344ec6ed6c327 SHA256 3c1785eb4ab63774ed3a6b1bddd602ef24cd6795f690bb3289d5a980bca06349
MD5 cf7436fe44a27481d1001082eb06326e metadata.xml 282
RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 metadata.xml 282
SHA256 3c1785eb4ab63774ed3a6b1bddd602ef24cd6795f690bb3289d5a980bca06349 metadata.xml 282
-MD5 2ef0a41feb8be34beec568bf9fe062d6 files/digest-apbs-0.4.0 235
-RMD160 0606ae9bd4d8f291be73e669911da24e3cc0c457 files/digest-apbs-0.4.0 235
-SHA256 b0c6ba75ae65cac80987484dab6a0c0bb889d01b852c12dd7c4e59e6062f19f9 files/digest-apbs-0.4.0 235
MD5 2e793d5244707356fd7f9ff50ea767c5 files/digest-apbs-0.5.0 265
RMD160 9aee8d28472d0c967b4eaf0b9db7b7a3c4c40d04 files/digest-apbs-0.5.0 265
SHA256 dbab309772ba0dcaa2605863678f47c1db4575bb72fb20d31aa4ccee8a7e37ef files/digest-apbs-0.5.0 265
diff --git a/sci-chemistry/apbs/apbs-0.4.0.ebuild b/sci-chemistry/apbs/apbs-0.4.0.ebuild
deleted file mode 100644
index 6eddf850efa9..000000000000
--- a/sci-chemistry/apbs/apbs-0.4.0.ebuild
+++ /dev/null
@@ -1,83 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-0.4.0.ebuild,v 1.7 2007/07/18 17:37:48 je_fro Exp $
-
-inherit eutils fortran
-
-DESCRIPTION=" Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
-LICENSE="GPL-2"
-HOMEPAGE="http://agave.wustl.edu/apbs/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-SLOT="0"
-IUSE="blas mpi"
-KEYWORDS=""
-
-DEPEND="blas? ( virtual/blas )
- sys-libs/readline
- dev-libs/maloc
- mpi? ( virtual/mpi )"
-
-FORTRAN="g77 gfortran"
-
-pkg_setup() {
- fortran_pkg_setup
-
- # the configure script has a weird MPI related behaviour:
- # if maloc was compiled with mpi, apbs requires mpi as
- # well and will bomb otherwise; if maloc was compiled
- # without mpi, apbs will silently disable mpi even if
- # USE="mpi" is forced
- if use mpi; then
- if ! built_with_use dev-libs/maloc mpi; then
- die 'USE="mpi" requires dev-libs/maloc built with mpi'
- fi
- else
- if built_with_use dev-libs/maloc mpi; then
- die 'USE="-mpi" requires dev-libs/maloc built without mpi'
- fi
- fi
-}
-
-src_unpack() {
- unpack ${A}
- epatch "${FILESDIR}"/${PN}-examples-gentoo.patch
- epatch "${FILESDIR}"/${PN}-gcc4-gentoo.patch
-}
-
-src_compile() {
- # use blas
- use blas && local myconf="--with-blas=-lblas"
-
- use mpi && myconf="${myconf} --with-mpiinc=/usr/include"
-
- # configure
- econf ${myconf} || die "configure failed"
-
- # build
- make || die "make failed"
-}
-
-src_install() {
-
- # install apbs binary
- dobin bin/apbs || die "failed to install apbs binary"
-
- # fix up and install examples
- find ./examples -name 'test.sh' -exec rm -f {} \; || \
- die "Failed to remove test.sh files"
- find ./examples -name 'Makefile*' -exec rm -f {} \; || \
- die "Failed to remove Makefiles"
- insinto /usr/share/doc/${PF}/examples
- doins -r examples/* || die "failed to install examples"
-
- # install docs
- insinto /usr/share/doc/${PF}/html/programmer
- doins doc/html/programmer/* || die "failed to install html docs"
-
- insinto /usr/share/doc/${PF}/html/tutorial
- doins doc/html/tutorial/* || die "failed to install html docs"
-
- insinto /usr/share/doc/${PF}/html/user-guide
- doins doc/html/user-guide/* || die "failed to install html docs"
-}
diff --git a/sci-chemistry/apbs/files/digest-apbs-0.4.0 b/sci-chemistry/apbs/files/digest-apbs-0.4.0
deleted file mode 100644
index 26b788e6d2cc..000000000000
--- a/sci-chemistry/apbs/files/digest-apbs-0.4.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 a9d5f8b24a40087998267c9df3eecceb apbs-0.4.0.tar.gz 6490858
-RMD160 259c89efed2296eb20af1f8076adc767ef35228c apbs-0.4.0.tar.gz 6490858
-SHA256 d1f6637e10b3051e6f618abaa14063f8f9bafbbbad75058645866b606d708acc apbs-0.4.0.tar.gz 6490858