diff options
| -rw-r--r-- | sci-biology/prosite/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/prosite/files/digest-prosite-19.38 | 3 | ||||
| -rw-r--r-- | sci-biology/prosite/prosite-19.38.ebuild | 40 | ||||
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/files/digest-rebase-611 | 3 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-611.ebuild | 42 |
6 files changed, 100 insertions, 2 deletions
diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog index a4e28e800241..e951d9e730e3 100644 --- a/sci-biology/prosite/ChangeLog +++ b/sci-biology/prosite/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/prosite # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.87 2006/11/02 20:49:51 grobian Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.88 2006/11/03 00:19:11 ribosome Exp $ + +*prosite-19.38 (03 Nov 2006) + + 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> +prosite-19.38.ebuild: + New upstream version. 02 Nov 2006; Fabian Groffen <grobian@gentoo.org> prosite-19.18.ebuild, prosite-19.22.ebuild, prosite-19.25.ebuild, prosite-19.29.ebuild, diff --git a/sci-biology/prosite/files/digest-prosite-19.38 b/sci-biology/prosite/files/digest-prosite-19.38 new file mode 100644 index 000000000000..0947e657d87a --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-19.38 @@ -0,0 +1,3 @@ +MD5 59669fd458fbb3f9d35f9ee71b9d2d9f prosite-19.38.tar.bz2 4542897 +RMD160 09832e7b85ba3b79bccd418909d66e50863a3cfc prosite-19.38.tar.bz2 4542897 +SHA256 8acdcc7232c2de022e0b404e06090dd2578c312552f544c5c916dd862fa430cb prosite-19.38.tar.bz2 4542897 diff --git a/sci-biology/prosite/prosite-19.38.ebuild b/sci-biology/prosite/prosite-19.38.ebuild new file mode 100644 index 000000000000..1cf2a6874be0 --- /dev/null +++ b/sci-biology/prosite/prosite-19.38.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.38.ebuild,v 1.1 2006/11/03 00:19:11 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +LICENSE="swiss-prot" +HOMEPAGE="http://ca.expasy.org/prosite" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )" + +src_compile() { + if use emboss; then + mkdir PROSITE + echo + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \ + "Indexing PROSITE failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins ${PN}.{doc,dat,lis} || die "Installing raw database failed." + fi + dodoc *.txt || die "Documentation installation failed." + dohtml *.htm || die "HTML documentation installation failed." + if use emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* || die "Installing EMBOSS data files failed." + fi +} diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index b468adb7b97b..368bfa875170 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.74 2006/11/02 20:19:00 grobian Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.75 2006/11/03 00:20:40 ribosome Exp $ + +*rebase-611 (03 Nov 2006) + + 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-611.ebuild: + New upstream version. 02 Nov 2006; Fabian Groffen <grobian@gentoo.org> rebase-601-r1.ebuild, rebase-603.ebuild, rebase-604.ebuild, rebase-606.ebuild, diff --git a/sci-biology/rebase/files/digest-rebase-611 b/sci-biology/rebase/files/digest-rebase-611 new file mode 100644 index 000000000000..12ed27a3f074 --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-611 @@ -0,0 +1,3 @@ +MD5 f233fef712a5f9528155f16063840013 rebase-611.tar.bz2 183868 +RMD160 27681a60625b7dc753d0e98bd0c5ba8de4686fd1 rebase-611.tar.bz2 183868 +SHA256 71ed50d5f7699b1ce5a6534d0744c96ec342b6a074a5008843c3bb1df7ae9ea6 rebase-611.tar.bz2 183868 diff --git a/sci-biology/rebase/rebase-611.ebuild b/sci-biology/rebase/rebase-611.ebuild new file mode 100644 index 000000000000..9d9a4a9f4119 --- /dev/null +++ b/sci-biology/rebase/rebase-611.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-611.ebuild,v 1.1 2006/11/03 00:20:40 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins embossre.equ || die "Failed to install enzyme prototypes file." + fi +} |