diff options
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/biopython/Manifest | 30 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.63.ebuild | 47 |
3 files changed, 70 insertions, 16 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index bb30a4404636..119ccab60910 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/biopython -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.73 2013/12/29 00:56:58 jlec Exp $ +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.74 2014/01/30 15:15:24 jlec Exp $ + +*biopython-1.63 (30 Jan 2014) + + 30 Jan 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.63.ebuild: + Version BUmp *biopython-1.62-r1 (29 Dec 2013) diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 1b8b79438445..a5ac93a28e50 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -8,28 +8,30 @@ DIST biopython-1.58.tar.gz 8035063 SHA256 f9183facf01d3b0b489401f43a0cae8249c3dd DIST biopython-1.59.tar.gz 8577492 SHA256 588abf55de3d8e4deac611a0f810a9c5d9ce7e5868d3064f79efe6cabd18cacb SHA512 235cbe0689f9a72fe4a0713cd6c5b963b0351f7565405ef643001df14c1c5809f023f7612c5253f2487eca123f2d6fe5b66bf817d511fa82155f509edaaf5096 WHIRLPOOL 61ea1bfa2bdcb32e1eb86f37bec2e1f1eb024743e72c572b13585a6f76fe2beb97a65a6414a01408b48a9ce899d1cb63b7b71383c468cddaf047385a3bdd0036 DIST biopython-1.61.tar.gz 10557825 SHA256 61ec95432f085277da90cde811feee78ced8c7770ef6d1c58d02e6f78b5a51b0 SHA512 dfc8bb902d3a8d927e7e3526d12724d92d96a4ca459534f70d117d7e17a467c4e8decf3214d9b27f63c76ae586eefa19fd1ee0ef1f26348e851d380b127082a2 WHIRLPOOL c373eba9c4811bb17f74cc058467c9a063bc3e2c6066d1dd3c02b6b35982fda132ee2cb353f3ce2a1e569274ff4e67e7d49fc2a74f92910edccd223041522e70 DIST biopython-1.62.tar.gz 11389349 SHA256 b056414028c8cc0eea3de20d740f7a12ad0813b705de7dd454deec8f9ede52c6 SHA512 0178fd2c2e7b5e9a6cf05e8b8567bb0c1a93e9b05d5faa9802e0e2b0d59fc5e2ce9786c38cbbd00be5b35e4e4a3b41869e774a50cbbcdf6b34788c873cf0f3f2 WHIRLPOOL 63f61243581afee07cd9295989cb90b2221588e066eb1d5695da4b75fcd0abc95a9341ce07a8ffdfc3e85afdc6002582c589ac39e36e98ca4c8a257e63826351 +DIST biopython-1.63.tar.gz 11506485 SHA256 643b92debdfe7fea8771749dee24fb68733232b6e3c02ce94e568a724cc40658 SHA512 d5ef9be40ccf57c35dc7ecdc55c9bc99b0ee6af896584fc029b16e22c1eb5a5cf7d68146635f32e252130fe193998841ac39dc9d96a5511547ba70fc38f566b3 WHIRLPOOL ec9a20264266b6412d8a793ed18bbebf1633d4f6123593b542fa14d00018097b490bf9b837cb186cf30216f8db97e3063e23e565279890cef28011684a2c8536 EBUILD biopython-1.57.ebuild 1423 SHA256 9096221918c30adbd01157581f42e61286cb7d20b8ad52ad52756d8c7de155df SHA512 782410b327703e9d6d612c22daf4c977e06051995e7d7a9763690ef101d0261e0689b7787a27ae0a205d26a01df09fa6b98e2d4bc6047856b35917bb87a3a262 WHIRLPOOL a58be3d9ed1aa3fee35d2fbf5ad208b82a1e0ff6067aa989a21989f9f45d5fe6020eb4ee639cdd2ab87820dbb5f52bdcb53aebe300e91c45584f000b914c41de EBUILD biopython-1.58.ebuild 1426 SHA256 f81164aafdb8b60963bbfc169fe103ca182c3d13fcfac1ebe1de62c08d4267bf SHA512 d03df5653dc6265bcd90bccec157a4e28e455bf0aa7473c2ca3ae72af059ea0c1100d4274ac140595259aeff98e3540b499905e480ab310e9e664bf149586695 WHIRLPOOL 79078204643918d609d02a586bad87d04bd58dce14b9f503472ba1fecade6a084476e78c980bcaa46c64f5a7db150c7408aa7aeea07ae78407d93dfdc69287cd EBUILD biopython-1.59.ebuild 1426 SHA256 062a763ab89f982dad4bc36d358359a1d80fc64a79cae5f7ab0ddc797edcf4c3 SHA512 50cba2bac1b5379b673f6ff82c8607195bc33441156b94f914938a1fe0aaff2e1894077eaacc158a7e14ed10598a29f22960460490d2f25fac3ad6a00faa646f WHIRLPOOL 477f06e99a07c30773c388134db9492ae02a0a1b4626af2fd281ced42694ea445b360d10b0cfca5fa5de03a49fb39ab87ed54670ec076147725a602ba45c66bc EBUILD biopython-1.61.ebuild 1314 SHA256 73bb77089b9aa06687d5aae8675b99d8447c092dd408daf29d7cfda04aecb56f SHA512 6ebe97c1659f71539a1dd60c9178344046085d9f3c3787f8a62d702c3026031dbafa6d49afaad2c3eb1270edfce40fd0ad749be76ce8792f7afe6b1790ae4b09 WHIRLPOOL 14430afb8e9c2bb53c175161ea2483a4825b1322934e72eb6655d8e3332652419302438050935c441a86aa5a387020e064ea57b07cfd53d90c42659ab17c0d22 EBUILD biopython-1.62-r1.ebuild 1346 SHA256 9c3b8a63c5094d6660dc53f5bd8437347dcc863d5baa8e5b945db75bac5458bd SHA512 d9c4b73ceea3e9322cdaf922e300a4da3708d531e7aaf95a0be2424182a378d629bad58794ed754dc17aed02e7e7d6586d53f86f8b7723dde36e0f9331f932f3 WHIRLPOOL 5d47aea89ac838532e0f843253a3dce100660a961a9e32c0c35a03144f229be47cab9b29ec96a3f23b1a0aaa9a5ecb5c9f3cdd2b5ee5bb0687ce7d629caae94b EBUILD biopython-1.62.ebuild 1286 SHA256 1c619ca81e8be0769789fbcabcfcbade48b5f0311ce2df423e5e6be184caff6f SHA512 8cd7d64388ee04a15ce80003c035e035cb9520f6ebfb25096caddf6848f64501f7198812f2954f6a355541985e1ea3c4602f3b9e4a7f26c33bb1133bb0654325 WHIRLPOOL a9abe1addad10d68fc3276bfd3782f4b6a2c0e6f32bd28358ff4d005e0f8e6e52b56f6d6e9e9a5f4959a36887beb76465dbd7873dcd14f5da6f2b888d757345d -MISC ChangeLog 11447 SHA256 195979e2b4b5f7c6ab8e18de67db2f9309bac35bbc0bc31bab8f687b34cb0b1d SHA512 e8309b603359b1e20bd2c7f3694c48bc68a72fc6cbf21cd55e973ada361d8f7077777c5f8d9d7ff904c390f8b546d6877f6352f45045cdebac0b9939e1664c3c WHIRLPOOL ed56304efa7b9752f4846a7da45b4fce24a1adb963a4386ad24377be256d1526f8e5bf03802c3ad5a728589b678b75c8c78b5d022137cf067ad82a0218dc2780 +EBUILD biopython-1.63.ebuild 1330 SHA256 93a4b8c94f18685e17c9e0cee0d9bb75dd3e3e2d36eb8377c05cc893278870dc SHA512 73b174abff04e6de56c4a8fc011e7cb7f448c5baf2fba4f55477cd79047306e47112b5c4e6aad84f6828ecfcb7691def0baac6b5ede22838aee00eae09c4e50c WHIRLPOOL 0cf0dfedb89fd0e0a3ccdc7da65f475198ce96f13e87ceb23ce6ddade0c5fdb49ffc59e30085c04972f5ba9998a2dff0e4d332c88a65242097cd24af29044074 +MISC ChangeLog 11565 SHA256 a92af1bb474d75fbbf4dee2a5f51922c66a10d1aff4a1a9711773587940d4e35 SHA512 0ca15aa6b3863bc95f6de508cb2282b928aa48e85ed19a9c8b7548ece74d2d5f5333b2b87319fb7f0cc94b371b3cf934b035fd1728973ebc77155153f9736972 WHIRLPOOL 3259c2f4990e9525636c3625fc72d9a4e31638a32f0fc648ae9f8304de84a191359a1aeb274674ed215afb7738f17adf457688087a4bfaa589c9eef1648c68e4 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.22 (GNU/Linux) -iQIcBAEBCgAGBQJSv3NbAAoJELnU8jG9FVirXTYP+QE6mDei5VYyDjIuObuA5yU9 -hhNXuJWsTKdGmOm3zFqSJOcqjMxLCiMZKaWFv8dHGqLFx18lJZSEwXuf/fQLXJ8B -aLniFWyanECYdIiSPHQIS+nxsPU9tn+au476dphJX3+XoqCQpioP+v55PKz7xKM+ -v1wf9oOFXMSQm6WTwcyb+ww13AawKSJoHjE7FdDzBEuCbIzovd3Te8zoj9c72v9+ -skvNZuIDDpJfjeeRP/LWGZQZEXbOQ+fLkZwGn4jv4dKpWk5pVkIVvg9GMKgIsRxH -BlVQ+hp5Xm/8NcVO5d4nd5Il4W+EU2ORkV2eN1YwY02Lc3yvYHeNEcYlwWrZB9KS -DXgO6NdA5DL8kdySEjM1Wyd3LfZDAmlZ1yeZ+b4xOGZRSbWhaKwHnx+4rlqhFWBW -WuRepOAmeWBemKXL05ISQDgRsGSaMjVfoWoMi1F7TL5Dw9unh0gVjbMujMfaHBt5 -lxpwmP5FlkSIBuLlisIYHhKgzbe0UfilYahkp90gp67bzQUksmIQc+bYwUbxPogu -8xSQp56gi6FL+xyb1A8N3lOVUaJadW0RBm0XG738ferTt/uhw94QG4vbXKPppiUJ -ukEcwvHDYY1DzY6VOCrHARTacGCqlu0FZ4xzvks8DkxcxAoZBvmbyGxY9Re4VBH0 -PeS8PgZprJYpH4498UET -=luMX +iQIcBAEBCgAGBQJS6myNAAoJELnU8jG9FVirR/QQAI/vKJ45l+0CNx0cx+MIfL77 +ADjRkmdA2Eyd2rfQOWVVbIJnLXI6gBiX1mr0rhV5PQjlax6fqATq/RgjKV03p0O/ +mpmQlj/RhNgFu1mrCAybORNdkh8WfsX0ObaubioTjCITomDfJ71eoFQ551KGFu0n +WzqzWD0/R9iv4qJu8S3jz90Tzrd/1fvLc0Fnup1VZ/QKT1qXHEOLQ/G3diTa3mm7 +YEAveZFv63dONfHMR1s9eDj4iGZvLrVcSJeW94sP0alKYbxXRMb6daQWL0ateqJH +JNxGboyIDTL6HSXWxkFjf7U6hVHp3YtCQsV1PGcVlwzWqyoK7SxseIxdP81cHxx+ +nhND81Htl1/txNOHS9PnTeeCu5qYb43DRjALGKsJuh5grb1gRDE4h5XztcdZXDYB +hFjMxRwwAbf85FK8BMsJhAftu1vxLMk/L+IXetR8gIQeQVRmgLUdjnpCu9qb+aQy +bkb9YPhDXtsy5mgfgU3+LAWth2yq5Ab105BP8Hufey4AHU891wGEJKJjVL8zHErj +OummVlaCirmM6AnuJo4Ci6z+652yCvLGTmQUnTUaTxSRaC6jcms9+OARkU0nDIP5 +1/RQ/f7ldCH++aDU6hZ9KHh3B7ioEA+VzQSPyjGPDHAjxoatcOeQWzdit4UaNvIr +xoiGXq9CADWT0PhzIsnc +=wWkb -----END PGP SIGNATURE----- diff --git a/sci-biology/biopython/biopython-1.63.ebuild b/sci-biology/biopython/biopython-1.63.ebuild new file mode 100644 index 000000000000..f8079711ce31 --- /dev/null +++ b/sci-biology/biopython/biopython-1.63.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.63.ebuild,v 1.1 2014/01/30 15:15:24 jlec Exp $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_6,2_7} ) + +inherit distutils-r1 eutils + +DESCRIPTION="Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="HPND" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="mysql postgres" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/rdflib[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/reportlab[${PYTHON_USEDEP}] + media-gfx/pydot[${PYTHON_USEDEP}] + mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) + postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" +DEPEND="${RDEPEND} + sys-devel/flex" + +DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) + +python_test() { + cd Tests || die + ${PYTHON} run_tests.py || die +} + +python_install_all() { + distutils-r1_python_install_all + + dodir /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die +} |