16 files changed, 115 insertions, 99 deletions
diff --git a/sci-biology/bioperl-db/ChangeLog b/sci-biology/bioperl-db/ChangeLog
index f9dfa92bd846..7e4543c6c597 100644
--- a/sci-biology/bioperl-db/ChangeLog
+++ b/sci-biology/bioperl-db/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl-db
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/ChangeLog,v 1.14 2015/05/27 16:28:25 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/ChangeLog,v 1.15 2015/06/13 19:16:38 dilfridge Exp $
+
+  13 Jun 2015; Andreas K. Huettel <dilfridge@gentoo.org>
+  bioperl-db-1.6.9.ebuild, bioperl-db-9999-r1.ebuild:
+  Module::Build is no longer part of core Perl and has been moved to dev-perl
 
   27 May 2015; Justin Lecher <jlec@gentoo.org> -bioperl-db-1.6.0.ebuild:
   Drop old
diff --git a/sci-biology/bioperl-db/Manifest b/sci-biology/bioperl-db/Manifest
index 7b32a134d9d4..1d7b1a771b7b 100644
--- a/sci-biology/bioperl-db/Manifest
+++ b/sci-biology/bioperl-db/Manifest
@@ -1,27 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA256
 
 DIST BioPerl-DB-1.006900.tar.gz 492799 SHA256 50df2447b7f3e26aebcf02ed7344d3ef562c3f5393c1584a8ae086185c8c9139 SHA512 e06b8b9aa4188a83128f910d7b4a031f69d36f75e4f2d7210357366379024ef39b58eca97112b5b419f141c82b7518086273cc97c9637382ee5e0ddb9ce28746 WHIRLPOOL b484ce9f464a7189e5b2fffd6facdd426e8b9009ffca5e1661986490bc45dc0269faec5e9eeebdb23ec5c706f62a670fbb6bfc5a60b11c268c7e6f34bf1f03f2
-EBUILD bioperl-db-1.6.9.ebuild 756 SHA256 e847714cab8f2dfb41f479f35ea19d824bbdc40b0e9c27ef7de963f984f65b79 SHA512 fd11cf66e4c6d8de8fb4bda44169786f2d3cb4ee3fe780b59c3edccc8c24d2761bbaf79cfd7c6c07dbde22a6a40dbb7d79e20e8d3ad4dbd9602ab012df7cbf51 WHIRLPOOL 038110f8043bb64a7ae43e4f1af65b9494f1a3a5508b3f5d880280eed80dc94d45c11a3551ddbcfceb1062465106ad9353896da66b5a5fe80b24c95bee6a45d4
-EBUILD bioperl-db-9999-r1.ebuild 975 SHA256 b6e138022894860c8b40bb8c1341dd8d031c41b43305f8bab9f3261c72b8bebb SHA512 582954d290ee5b6eb8decad3d2f18f95e2ee9280f909be1ca4222f12fe016d03e47841b5ce66bd1c12c85a64b46e9cf19836b8501d23e6157a909daabcbc9945 WHIRLPOOL 2500389084e7ae3937de7d2676f823f61793cc86849acb91c678e2623723bde36d6cb84c42dccde2a95352291515dcc499b37311e0b47fd67eeb34be824bf94b
-MISC ChangeLog 2124 SHA256 40d7ea8d6fa77f96dc6524056b81095a02eb5179c2b20fbaa15e4e7f34e80b23 SHA512 cbf5bfe096f3268147b8e71fa6976a23b731fe0adb893dced44555461dbfc697794d95cc03caf732b2b61aa688ce9ec24ce77a60ac9c293e5792cf06d2e68641 WHIRLPOOL 256d943291404df636510480de61f47feb771a1351b5b74d90cd32c8b7aa8eadc7d5ec2306b19d11d90d45c4ac5caaac7e1819ca3d0fb527923cb9d9e3dbc365
+EBUILD bioperl-db-1.6.9.ebuild 758 SHA256 bf06b066ba3898a3bc41634e0019e55a9d82a7c115d935e2dc874ee5db317178 SHA512 9f86980d752e366382c59981fcb9fd93a1a686464545b35ab8660b85efff88ac2057588497a429e87558c205dab0d807d0589ccce41c0b15e81929fece3b06f8 WHIRLPOOL 2adc1d6df77ac66d16671413f5895163428b0462031fc491d6ea97bf782d4eb5b21c493257c054a020b5131e45fd3bc798876b2f42187aff72d121a59c9698d9
+EBUILD bioperl-db-9999-r1.ebuild 973 SHA256 00e8dcf8dbe3425c34237d3b5feb9d76435c5af4fd0f6904043133c52e1912ad SHA512 cbe6f1e05ce434a3bbf767cab4ed51dd5144f762b0b9df8c54f0bae6f45e5f02e7cca8def5a7756f51feb928a6f95ec7f53894bc4879b6fdc07c4041233e0594 WHIRLPOOL 72d2de301238a6910c531aad6c92425501c5ebe68f08a4d954c1f25e5bbb8d4c25a1502d28a4480827a9d29a8f05b9c1de5d89180c6d0d7c554fdcd795d27c2b
+MISC ChangeLog 2319 SHA256 cc5e31c7b46436054b18d1d2b6d020c68080dc59e9c807857e81fbfbdf72a1ef SHA512 dc3f7e0d92bd8984a83aed5a5fe739f24cf2e96f53087af0f6d36c6a441102733f109c22da0e960c8b2815a133b99a2129c448077e36f7a5f9a368386f302aa5 WHIRLPOOL 62459d94d25fcbe5ccfdc3ffb4316600acd1389cb2ebaebc927f2680e8aca56d955ff2cb02183cb754efc048e6fd751108fed81aba97683573f383ce0f1b69d1
 MISC metadata.xml 243 SHA256 caaade52752dd9332b4b9a7d233b1ea13357b98591091b09297f57407d9bf55d SHA512 43432ecd4c8101878bf4f42adf279128df74e0d0129c0f178658104d5c60e9938f270cbdd8760d0e000b95a11fcf7d1cba8a58ac0af7a1e595bdfd4761e84dac WHIRLPOOL 7de11b5857df86f15986efd61327090d4112ee9b975680dde9db7c716e760623e2ca114d781205f978aa175657ad4e54ad26a1e15d820c43b479b4957d9030c9
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diff --git a/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild b/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild
index 189ab496af2f..4f1629a0ce65 100644
--- a/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild
+++ b/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild,v 1.5 2015/05/27 10:14:31 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-1.6.9.ebuild,v 1.6 2015/06/13 19:16:38 dilfridge Exp $
 
 EAPI="5"
 
@@ -25,7 +25,7 @@ CDEPEND="
 	dev-perl/DBI
 	sci-biology/biosql"
 DEPEND="${CDEPEND}
-	virtual/perl-Module-Build"
+	dev-perl/Module-Build"
 RDEPEND="${CDEPEND}"
 
 src_install() {
diff --git a/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild b/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild
index f2ae78d9e422..6099cd0a6f66 100644
--- a/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild
+++ b/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild,v 1.3 2014/08/09 22:47:12 zlogene Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999-r1.ebuild,v 1.4 2015/06/13 19:16:38 dilfridge Exp $
 
 EAPI="5"
 
@@ -20,7 +20,7 @@ IUSE=""
 CDEPEND=">=sci-biology/bioperl-${PV}
 	dev-perl/DBI
 	sci-biology/biosql"
-DEPEND="virtual/perl-Module-Build
+DEPEND="dev-perl/Module-Build
 	${CDEPEND}"
 RDEPEND="${CDEPEND}"
 
diff --git a/sci-biology/bioperl-network/ChangeLog b/sci-biology/bioperl-network/ChangeLog
index d477aed1e78b..886caf90fd34 100644
--- a/sci-biology/bioperl-network/ChangeLog
+++ b/sci-biology/bioperl-network/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl-network
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/ChangeLog,v 1.13 2015/05/27 16:30:54 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/ChangeLog,v 1.14 2015/06/13 19:15:52 dilfridge Exp $
+
+  13 Jun 2015; Andreas K. Huettel <dilfridge@gentoo.org>
+  bioperl-network-1.6.9.ebuild, bioperl-network-9999-r1.ebuild:
+  Module::Build is no longer part of core Perl and has been moved to dev-perl
 
   27 May 2015; Justin Lecher <jlec@gentoo.org> -bioperl-network-1.6.0.ebuild:
   Drop old
diff --git a/sci-biology/bioperl-network/Manifest b/sci-biology/bioperl-network/Manifest
index c28e2c6f2640..cd6e5c7e25f1 100644
--- a/sci-biology/bioperl-network/Manifest
+++ b/sci-biology/bioperl-network/Manifest
@@ -1,27 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA256
 
 DIST BioPerl-Network-1.006900.tar.gz 2198089 SHA256 5b31ab7d048ee8e7bd6ba933f96b904d7ee06b46ab29c00276eca3513a77c32a SHA512 d0a95af17cb024cbc615c784f1dbcddd7bfc5b54524163ab127f1077ded18df222fe067c085f3dd17dd416d6417b8f726526be164e1e33144991393f6b6d5842 WHIRLPOOL 65ff9e2509c0136232b7cff1aa5e8ad55f26241f51e70e6d34f9383c0af4bfdb0c5358b1a69075d480e9e1fdfa19342058fbe33ea4d4a633220ef3a80d6ed984
-EBUILD bioperl-network-1.6.9.ebuild 742 SHA256 7576beb479b94865d9bad4fa2f31427c03abe83b5ca328659428f17f02585745 SHA512 9536b87418c314c84aa9b8351ce27c5e413fb428c9b350a89c11da884313529893f863deaa297bfd60239fe1fe841e919dba6891aaf4fab3743ea91e1ec4d7c2 WHIRLPOOL 6b87f34a977db3a0a73a60435fb34f3bc3abeda0758b69019f0a8421e51b7c0494225763e6448067610aac1533cd5ef22ff22971259fcfd740d61f883849c7a3
-EBUILD bioperl-network-9999-r1.ebuild 816 SHA256 eb951e17bcd4981414298a748f987260565ce555e691b4b84659811eac15c325 SHA512 2bbab52c65518b555fd50c0a0d0d7e4881559813c2c46e3f361d38ceda9c507d124c448e1aaf139941cb5e2a24e6c97bd103df3880c248c621161b4656b398ba WHIRLPOOL 1772b353b306f21fb7184affe99dbf8afc54c456fb36be05b19c12ad57387bb8d8ade6e794a45c9f56af83ccd7c25cfdcba8d03e61122d6a7a0d28013ff95904
-MISC ChangeLog 2118 SHA256 f936ebb3f34f236b3369ee0850f842fa6452ffab50058e3c530e25cbfb6ba3f0 SHA512 35d306f3a7907cc8324cb6d870bb558f9d5f64f76bc5a7e33a3660d86a3842aa43d933e24da9ec7b545ddc18985901404c3760b3dc11712abd7a9aef3b24f81f WHIRLPOOL 52fbb99de39a45d316e56be6a7feaf0a860d543afa0545b4715b0ef97ed9b0466dc56871fb05bc2dea720cde8623e9324fe678225bef47ba371f42dde4369c7b
+EBUILD bioperl-network-1.6.9.ebuild 744 SHA256 c8c2360d3db85d3d4c70f4b57139ea4792d301a63cffdd6623f984d5a6e84c7c SHA512 923b067de39dcefce4c698981185769b3a80fb5c1cf28b9b8f0589eee6aa304b44bd827e83386cf4ec018c5e29d5083336ed563390386d31ec7150eac3edbea3 WHIRLPOOL cc9bc0448ac8dc4fd005476be3b3c379245809d495120597efcdabd283e7141b8079fd7e19f7d0dd35c7163f704472a041ffdd644e0312b22ca2d7f0a4e51cc4
+EBUILD bioperl-network-9999-r1.ebuild 814 SHA256 c9c0f0f4d365a722e38989787cee893f5c30405843aa2c8c7a15e56620a6cd29 SHA512 b34a60b032b27af6e15b5a01c89aaef7e7b5fe15e0ca4bbb043f384d0e107c720ced2891e7592ccaa8801ca12abecbc75bf1fe66f5fd0ea40e67003c533e3837 WHIRLPOOL 13548ed75064121593bfe4469c83ac58ba97e42b800f824fc01bfc31de42a29ac981712d33e5f221c752ed58836e6187849ccff5e05942d9d0746f899646db91
+MISC ChangeLog 2323 SHA256 c902f57dbd1e62a8d0138e1c881dbe807a073d246085ce096a71093eaf5f1e2d SHA512 9fe2d1a42326a333c406220c1a4360394ac801b06c1dc823b62bd73526420cc1ecad9ec6274cbbdc49048aac46a3da2cc968e6810b519d8a7965fbd109c00e43 WHIRLPOOL 0d730ec28006f081c90576eae34524ea24bfa47e051ad060062ec41c92df1d5941849d0a3e0a6fc2f354f2bae46b52e0e00f3e0dbbc04a68b79ac9104f17c52c
 MISC metadata.xml 248 SHA256 dbfd5f643fae0df4baa7271ae0029203db6b1c3a3ab9774ec1b9cba26ab3c2cd SHA512 13b45d68789a04b4253bcbd9d10883c1eb3256657a67df00827c7c6e9e4853dbf8a670eb88e674d84a2790bc8c9aa4f5ce55ff7478eb7d261011bf6f573719b9 WHIRLPOOL 684409333d8a43c27c5c86816e1def48384ecd85353f381cc98122477a4e91bfae7e071cf3754727651b70adc6a5f9258e2d78f3689bdf6e2db2db8e72c30859
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diff --git a/sci-biology/bioperl-network/bioperl-network-1.6.9.ebuild b/sci-biology/bioperl-network/bioperl-network-1.6.9.ebuild
index e05a7526c68d..d7433daad56d 100644
--- a/sci-biology/bioperl-network/bioperl-network-1.6.9.ebuild
+++ b/sci-biology/bioperl-network/bioperl-network-1.6.9.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/bioperl-network-1.6.9.ebuild,v 1.4 2015/05/27 10:14:27 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/bioperl-network-1.6.9.ebuild,v 1.5 2015/06/13 19:15:52 dilfridge Exp $
 
 EAPI="5"
 
@@ -21,7 +21,7 @@ SRC_TEST="do"
 
 CDEPEND=">=sci-biology/bioperl-${PV}
 	>=dev-perl/Graph-0.86"
-DEPEND="virtual/perl-Module-Build
+DEPEND="dev-perl/Module-Build
 	${CDEPEND}"
 RDEPEND="${CDEPEND}"
 
diff --git a/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild b/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild
index 9b2cfa8bd237..32632cb4e9b0 100644
--- a/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild
+++ b/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild,v 1.3 2014/08/09 22:48:22 zlogene Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-network/bioperl-network-9999-r1.ebuild,v 1.4 2015/06/13 19:15:52 dilfridge Exp $
 
 EAPI="5"
 
@@ -20,7 +20,7 @@ SRC_TEST="do"
 
 CDEPEND=">=sci-biology/bioperl-${PV}
 	>=dev-perl/Graph-0.86"
-DEPEND="virtual/perl-Module-Build
+DEPEND="dev-perl/Module-Build
 	${CDEPEND}"
 RDEPEND="${CDEPEND}"
 
diff --git a/sci-biology/bioperl-run/ChangeLog b/sci-biology/bioperl-run/ChangeLog
index e4f5a620f95c..f0485edb0285 100644
--- a/sci-biology/bioperl-run/ChangeLog
+++ b/sci-biology/bioperl-run/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl-run
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.28 2015/05/27 16:26:34 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.29 2015/06/13 19:15:04 dilfridge Exp $
+
+  13 Jun 2015; Andreas K. Huettel <dilfridge@gentoo.org>
+  bioperl-run-1.6.9.ebuild, bioperl-run-9999-r1.ebuild:
+  Module::Build is no longer part of core Perl and has been moved to dev-perl
 
   27 May 2015; Justin Lecher <jlec@gentoo.org> -bioperl-run-1.6.1.ebuild,
   metadata.xml:
diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest
index bfca7606a260..2d58e0ac19ad 100644
--- a/sci-biology/bioperl-run/Manifest
+++ b/sci-biology/bioperl-run/Manifest
@@ -1,28 +1,28 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA256
 
 AUX bioperl-run-Pise-test-patch.diff 722 SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f SHA512 75aca2b0faa198e923673f4f0e4c40c04179881dbe33ad4ae7f831ff7eb633d26baa44dd983dcf8e3edef672b4dbd92d3d46983ecc8419cca1beb3acdbdf2111 WHIRLPOOL 54367c5bf97f72adce7ae21dfd554c9ddafdc2b176a2ac1529aa3c8cd7dfda0d961b1249d025c3a810458aebc28e42365434c633cd30ead0348141804de3c5b4
 DIST BioPerl-Run-1.006900.tar.gz 14546677 SHA256 6eddca8aae38a139caaa0b28505e2ff3e919e8ed39b7539a662b0145f1f08d96 SHA512 47f2b853885c604291ac0aba3269b897de59cf7da6f7d54a50ff950cca836338091309df550f32695159c620be23391306d0421d2bbc22eebbb61a9e280ad83c WHIRLPOOL a671180b3680d94683e771ba661e0f86430814200efcd8df1552dbc3c30228d90ea8be1b47cc36603cbfc6eadacb276414ae6d79e30ec80495fd836eb1732cca
-EBUILD bioperl-run-1.6.9.ebuild 1085 SHA256 f521b2beebd86c5c2693be2eca730fded712d0fc9ba0a102523bafc8569fb4a7 SHA512 7f3c54542c40f71dcfcc19ea8026609ef2f8dfbc84e7170f868ab9e02cd12fc4589626acf542e6f944a36d06856f786ed5066305e044d5fa43dae841f6632d0d WHIRLPOOL 45362ca256f94068e7c9375b0362d221cd193988e5635cf2e17d63b6046edbf7bda9a2f00f5144ebe3681ed204a22ba4161a9554b3ea749be8212f05d7ed502a
-EBUILD bioperl-run-9999-r1.ebuild 1124 SHA256 ae3731d4ac16ba293b0a9e04e85e11d8d577f7dbdf395de2058fe61fa8699afb SHA512 9892d3db721583a055e8e684b95bebcdc4bf04bb179d6707b009afb8195a0b5535d02ff1a4ffb5cf506fdbff8706a6f5cb2fccb936254f327350e64a9904eaa2 WHIRLPOOL 2ccdf58b4090114df96d3bb594453e27b5ce56c65166b8a0c3b64692bcfab25f6846af7e144d65b7ffbf3d43c2a5c0ae7c1efb2112048fe1d7e664ebf9ba8d87
-MISC ChangeLog 4725 SHA256 2a40cb2f9909594daac499b7bab9983c2f76db006446f1323f2c5775d38bfd70 SHA512 c22b133def33e6e505b7fb73d1f40c104dcf11ea99e94cbef477fe8a1526969fe6d523b8e2dfc445eed1e2aff402c82907225a58f06b448d5aa9c3eff797d97b WHIRLPOOL 93d9d0374349156458c7a82d8074866310d4141c1bcc8dc180f7b3882c35116d4c63dadd4416d9f6ec67782b11fdcf7896445c8f0b4a528785e92e06a917b020
+EBUILD bioperl-run-1.6.9.ebuild 1087 SHA256 5f066713c0e4708d32e2865e1da21631d22c339796b267df6b857c8500d128fb SHA512 fe24e6eb32bce50f842ed73a9bd87292909574a8766d1c9e19eae03ee31c28724e64dffab2e12321b242db5a7d18d2d6412f078ab45539390bbc70870651fc0b WHIRLPOOL 818179851714174e3f27fa9be7d2fe3945a83c1f9100c7653970cb7542b31ae7bb3c9f9c3e005c27fde93c46a6bd6f9425e74852e20e4be5b0cc5298aa7ae4ea
+EBUILD bioperl-run-9999-r1.ebuild 1122 SHA256 ac97d895f7af72d3f940628293edec0908835b743e756993e912f0e023fc2d4f SHA512 d1249bd7c2547218fec1f971b29354a3a4d58d94e4beca131ddf2562aa0e3825c54b4980765e3a27a8a94dfdf0f1457d145763e0281337a2ed8d03fcf502734f WHIRLPOOL b1d6783eaa59ec217f65808f4cc64209545f6427ca813a3783261ae03811bc7f2f5d0b32a5b21b250cd54406e3102fe5568cb6e41ca5eb23b897859306839281
+MISC ChangeLog 4922 SHA256 894c5d73973fd308ef87e47c9ec9200d4fa6e69cbaa48add3ec1bbc0da5ac61e SHA512 3810afc32235725f917639aee6a21ad83521d32787efa453d54098c89fac36d04f7573bb8c93d3fd7f02db897382417e17a14cfe3ffa865b6d88d41c7a99dd03 WHIRLPOOL 143823eb2873eaa24a283bfda5a347ada22f018e1a87308a8fc3e502d1b4a929b7d1d0a61d7f9fb705850fec35b1ab6f108c23a2dbfe1f23b936473eef3c11d2
 MISC metadata.xml 244 SHA256 25b9b30a7e01909ac80d0d3a4d22ff39057d8a7de30446571e88bdc8a276e2b7 SHA512 b609ea3873cb8765079a83583f436e0af9d1fdb9262c3f2c231d13c2294901dad5ab563df3570bf06043d7bedc76b23e4470c51d88a9861045e8883e72fc77f5 WHIRLPOOL 298d3100a1a62e9b653e62345e227856994c306e6aa641dda8f676c4bef5e3ae83993baf3e1c2b8505921c0a84956122792503d83b2497989143862efcde48ec
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diff --git a/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild b/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild
index afe153d8d8dd..64d5f18c37e2 100644
--- a/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild
+++ b/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild,v 1.4 2015/05/27 10:14:23 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild,v 1.5 2015/06/13 19:15:04 dilfridge Exp $
 
 EAPI="5"
 
@@ -29,7 +29,7 @@ CDEPEND=">=sci-biology/bioperl-${BIOPERL_RELEASE}
 		dev-perl/IPC-Run
 		dev-perl/File-Sort
 	)"
-DEPEND="virtual/perl-Module-Build
+DEPEND="dev-perl/Module-Build
 	${CDEPEND}"
 RDEPEND="${CDEPEND}"
 
diff --git a/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
index d6a8ce319ad7..256c96bf125a 100644
--- a/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
+++ b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild,v 1.3 2014/08/09 22:49:45 zlogene Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild,v 1.4 2015/06/13 19:15:04 dilfridge Exp $
 
 EAPI="5"
 
@@ -27,7 +27,7 @@ CDEPEND=">=sci-biology/bioperl-${PV}
 		dev-perl/IO-String
 		dev-perl/IPC-Run
 	)"
-DEPEND="virtual/perl-Module-Build
+DEPEND="dev-perl/Module-Build
 	${CDEPEND}"
 RDEPEND="${CDEPEND}"
 
diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index bc452e6923e4..ff99d4a4158c 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.59 2015/05/27 16:18:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.60 2015/06/13 19:19:59 dilfridge Exp $
+
+  13 Jun 2015; Andreas K. Huettel <dilfridge@gentoo.org> bioperl-1.6.9.ebuild,
+  bioperl-9999-r1.ebuild:
+  Module::Build is no longer part of core Perl and has been moved to dev-perl
 
   27 May 2015; Justin Lecher <jlec@gentoo.org> -bioperl-1.6.0-r2.ebuild:
   Drop old
diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index ca58a40e5b07..b69969e856ea 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,27 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA256
 
 DIST BioPerl-1.6.901.tar.gz 12284856 SHA256 8c74bde900222ce3926491ee103997c841c8755148c8dcaf0be1abfd61c5ac01 SHA512 227387437c940da1435ed83fad6ec2168ca12a729c90dc557e84750c6474213874c23a8f23e50db4027909469627baee581faa11be6208c8e0a5453a01c7eca4 WHIRLPOOL feb1f93a617e0135ab84b0eeb36ac986e817ce76ada0f40518090f6a480fbb1047339b33fcd11ccff444f89c4a06c41b5abaab66b662a50f17ae34f9b22d66fd
-EBUILD bioperl-1.6.9.ebuild 1660 SHA256 ac7917804ac1901a6f661d0141629d57aa0b24ef43bb39c77a03aafaf09bac8e SHA512 d58b7f6874cc498655cf6a387186941240c2f5107aed4b061db0cdfff954276afed0c282e2db875800cc21e1d00decca3ed1839730a097b875b53e8026cce250 WHIRLPOOL bf58f21755a9f6096ab72834141b13c531e19fef7e9be90f7a9d7c586f2fdbc98763a39976453fc02713ed6582ce8db6c35f4f87cb986f89c1bde2cb379fa493
-EBUILD bioperl-9999-r1.ebuild 1951 SHA256 846d6fc690a4b8b980ee2e76e731fd9947c746f9460ac5aae7403ec3959deaac SHA512 76e96ed370775d52c0046e1d1d5e4bcbadc83baee8c053e93cda243aed85e41b8fe5b0a9ccfb11cacea5ba359d8b4928ea2a3dc7d415511d4c45605887a53ab0 WHIRLPOOL 2ac566fbf3d3ea585ba7a26ede6231bbbd4031d9663c134eebdcc40bb39733766f7cc391cb18dde3b82971bfe291d7abfd12a5fb3691abd12f3cb30f7cd494a2
-MISC ChangeLog 9903 SHA256 40538df519907ccc2f0f2b5d2a241b333851c33a3db959edc9190b4a9a611dfd SHA512 4f8eaa1ddadc1401bda065b8f41068ad563bcc5a156b226dcb234db86513476ed1f27600fe7cee6bc773341079149830f4d7d85150f3f154d63c67622d200756 WHIRLPOOL a7733d4eb9df5afdf14cf4277300c220b998c9afca33b9137ce8bf4fb616a69e58cffe95fbec034f0c41a9122305d3a7a3a196e04eadc9d99584a9a511bb606c
+EBUILD bioperl-1.6.9.ebuild 1662 SHA256 57d373708f421747995fcb85cbd25155bccdc20c4ea6ed4b47a1dd465f40ceb3 SHA512 21287b1bc545b55214c36d38994bb925dcf33b96fcc67643f2c3752c2c3f65967aadfcb5c32399c7b949e9a71b6828c9051ebd94c6319fe4189864731e022671 WHIRLPOOL 0afa8faad1ceb70b886ba12880c6ebb1d1d2c3811007b1bc0482602d5176b017da249feeabb3165a69d95821b2a7c162e6ea108b0e13ea5d9c4d548eccff2a36
+EBUILD bioperl-9999-r1.ebuild 1952 SHA256 978a8a0e64327d69a9662f34d8e6020747c8f6f4091b5913c8a6668b9ebc6931 SHA512 d7bfd170d0bb0bb9ca6b9f6fb313372d3966b988ae1cb1623f05bda57188d03ab22b2e5ffcaa038c15cf95451cb29de656975bd352bc722e087b7351b1c0dd74 WHIRLPOOL 313b04ecb3e67bcd54f9fc5945cb2943c347af6e34afa64110ab899881877c7f87653885a25256e7834b429ae5934f1b45131f87b524790c3b518ea23c46a038
+MISC ChangeLog 10092 SHA256 c62eae3a76746911bc6ba9682db44cae7205fab5fbde5e04f6ff55c22b5d55c6 SHA512 dc29fc462dc9b6c9d0dfe57c7e594b7d12da79aa12382e0ac738a48c470e0051ecac32b15c1af79d68183798050a2d09ebed07e8bbd78305ffa5cee4a3fba657 WHIRLPOOL 657e7f90335f20d92a4eea80d606464e279a282b85603c12b289e446204d00f6e02aa6b761fac0802a3f95ebd4f5ea38adb7e1a9ec9b1c53e1b16e9a4adb74af
 MISC metadata.xml 440 SHA256 5360673bcd3c5b31e60fc54f1865790aae76e299e82b5e6a41c5e37d026cccaf SHA512 d691277d3ddf5d944c2898440a4ff4ac6649366d81265599f9e0d23ea1db6745f7578112a73f04d1cfb705789ddec754c82b0a9590989f6ef41124e87d57d260 WHIRLPOOL e3a8031ab9b2ab901ce5e3371e6af05d85fced36582f61491a0a7f24e256888bf5a065189a6dba4d7e5f6dbf28d88b7b050a4fe29ae3d5716d15ac4cc74be86b
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diff --git a/sci-biology/bioperl/bioperl-1.6.9.ebuild b/sci-biology/bioperl/bioperl-1.6.9.ebuild
index aa8bec75b9a8..1250bcb7d85b 100644
--- a/sci-biology/bioperl/bioperl-1.6.9.ebuild
+++ b/sci-biology/bioperl/bioperl-1.6.9.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.9.ebuild,v 1.7 2015/05/27 10:14:19 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.9.ebuild,v 1.8 2015/06/13 19:19:59 dilfridge Exp $
 
 EAPI="5"
 
@@ -55,7 +55,7 @@ CDEPEND="
 	)
 	graphviz? ( dev-perl/GraphViz )
 	sqlite? ( dev-perl/DBD-SQLite )"
-DEPEND="virtual/perl-Module-Build
+DEPEND="dev-perl/Module-Build
 	${CDEPEND}"
 RDEPEND="${CDEPEND}"
 PDEPEND="db? ( >=sci-biology/bioperl-db-${MIN_PV} )
diff --git a/sci-biology/bioperl/bioperl-9999-r1.ebuild b/sci-biology/bioperl/bioperl-9999-r1.ebuild
index 54dcbb4cc10b..dc8a3305331d 100644
--- a/sci-biology/bioperl/bioperl-9999-r1.ebuild
+++ b/sci-biology/bioperl/bioperl-9999-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.4 2015/04/08 08:03:21 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.5 2015/06/13 19:19:59 dilfridge Exp $
 
 EAPI="5"
 
@@ -50,7 +50,7 @@ CDEPEND="
 		dev-perl/SVG-Graph
 	)
 	graphviz? ( dev-perl/GraphViz )"
-DEPEND="virtual/perl-Module-Build
+DEPEND="dev-perl/Module-Build
 	${CDEPEND}"
 RDEPEND="${CDEPEND}"
 PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )