diff options
| -rw-r--r-- | sci-biology/bioperl/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/bioperl/Manifest | 15 | ||||
| -rw-r--r-- | sci-biology/bioperl/bioperl-1.5.1-r1.ebuild | 52 | ||||
| -rw-r--r-- | sci-biology/bioperl/files/digest-bioperl-1.5.1-r1 | 3 |
4 files changed, 74 insertions, 5 deletions
diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog index cf54b1ed0d7d..14841a2a3269 100644 --- a/sci-biology/bioperl/ChangeLog +++ b/sci-biology/bioperl/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/bioperl # Copyright 2002-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.22 2006/09/13 01:41:58 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.23 2006/09/30 03:03:08 ribosome Exp $ + +*bioperl-1.5.1-r1 (30 Sep 2006) + + 30 Sep 2006; Olivier Fisette <ribosome@gentoo.org> + +bioperl-1.5.1-r1.ebuild: + Added dependency on io_lib for the Staden extensions. Dropping ~alpha, ~ia64 + and ~sparc keywords (see bug #149577). *bioperl-1.5.1 (13 Sep 2006) diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest index 9ff9f131262f..c33172a49e36 100644 --- a/sci-biology/bioperl/Manifest +++ b/sci-biology/bioperl/Manifest @@ -4,14 +4,18 @@ EBUILD bioperl-1.4.ebuild 1175 RMD160 3a873722d4d53220920e4602c6bfa618ae3b9e79 S MD5 de99ea907d1aaae79d2ed082d3c5ffcc bioperl-1.4.ebuild 1175 RMD160 3a873722d4d53220920e4602c6bfa618ae3b9e79 bioperl-1.4.ebuild 1175 SHA256 dc8b5b849884b106630deedd2e5fe759f9b304e87b71ff3cb4c6b30a4a1dd560 bioperl-1.4.ebuild 1175 +EBUILD bioperl-1.5.1-r1.ebuild 1210 RMD160 d7a596ed022aa9377b6f4ba9cb0ebae57724d886 SHA1 dcc737fb35d81e7727b27f1244dcb49aef48ea9f SHA256 159535f469707fd51956e39cdc19456f381369f0aeeef7a8e4411c5dd57a6056 +MD5 928ca45cefebdebabc4914bda15260ac bioperl-1.5.1-r1.ebuild 1210 +RMD160 d7a596ed022aa9377b6f4ba9cb0ebae57724d886 bioperl-1.5.1-r1.ebuild 1210 +SHA256 159535f469707fd51956e39cdc19456f381369f0aeeef7a8e4411c5dd57a6056 bioperl-1.5.1-r1.ebuild 1210 EBUILD bioperl-1.5.1.ebuild 1197 RMD160 b3a92d8eba1f2d3da639ee4a33b469619f40a0ef SHA1 d87b74cef60fdb9a8991d76efc9b8ac54c49b0a8 SHA256 2c8915c6ddc0726b277994a605ccf96082665f3968b4bb6a04348c700b7a82df MD5 fa4383b2076e0db29a7c0babebc2129b bioperl-1.5.1.ebuild 1197 RMD160 b3a92d8eba1f2d3da639ee4a33b469619f40a0ef bioperl-1.5.1.ebuild 1197 SHA256 2c8915c6ddc0726b277994a605ccf96082665f3968b4bb6a04348c700b7a82df bioperl-1.5.1.ebuild 1197 -MISC ChangeLog 5237 RMD160 45f121a54f97e27b229df8c9acb2314ced9874c9 SHA1 0f06a705640957bb273f893f08f2ebcd75b27db6 SHA256 9682b5d4b99260334ce52045726b41dc126d60c11c9156fb07b8633405c83281 -MD5 c4ecfac840042e32f78102e10d932291 ChangeLog 5237 -RMD160 45f121a54f97e27b229df8c9acb2314ced9874c9 ChangeLog 5237 -SHA256 9682b5d4b99260334ce52045726b41dc126d60c11c9156fb07b8633405c83281 ChangeLog 5237 +MISC ChangeLog 5472 RMD160 0d857d79bc30cd174b221ec6e72ecb64208e72e0 SHA1 395bf4222897297dbde3da9ee54f340ae9a892ba SHA256 ed1cd702cbdefebf985f371c79943bf20429df0168137492fe1f9b725b373aaa +MD5 8955afdb42dbe0e5053bc00221fdd765 ChangeLog 5472 +RMD160 0d857d79bc30cd174b221ec6e72ecb64208e72e0 ChangeLog 5472 +SHA256 ed1cd702cbdefebf985f371c79943bf20429df0168137492fe1f9b725b373aaa ChangeLog 5472 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262 @@ -22,3 +26,6 @@ SHA256 7f2cfe5a68d98c143ebc904b1c54de78d21218c225a93870256ea74c3d043fd1 files/di MD5 970b42591ef0cc641b037271250cb250 files/digest-bioperl-1.5.1 247 RMD160 772c74652407b0ed6de23eb6b5c4a524134dacd2 files/digest-bioperl-1.5.1 247 SHA256 92906734ae731b92c7acee45ed4a0e7827a47f6e4dc4a214e6049ac95734f1d3 files/digest-bioperl-1.5.1 247 +MD5 970b42591ef0cc641b037271250cb250 files/digest-bioperl-1.5.1-r1 247 +RMD160 772c74652407b0ed6de23eb6b5c4a524134dacd2 files/digest-bioperl-1.5.1-r1 247 +SHA256 92906734ae731b92c7acee45ed4a0e7827a47f6e4dc4a214e6049ac95734f1d3 files/digest-bioperl-1.5.1-r1 247 diff --git a/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild b/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild new file mode 100644 index 000000000000..558b268d37f8 --- /dev/null +++ b/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild,v 1.1 2006/09/30 03:03:09 ribosome Exp $ + +inherit perl-module eutils + +DESCRIPTION="collection of tools for bioinformatics, genomics and life science research" +HOMEPAGE="http://www.bioperl.org/" +SRC_URI="http://www.bioperl.org/DIST/${P}.tar.bz2" + +LICENSE="Artistic GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="mysql gd" + +DEPEND=" + perl-core/File-Temp + dev-perl/HTML-Parser + dev-perl/IO-String + dev-perl/IO-stringy + dev-perl/SOAP-Lite + perl-core/Storable + dev-perl/XML-DOM + dev-perl/XML-Parser + dev-perl/XML-Writer + dev-perl/XML-Twig + dev-perl/libxml-perl + dev-perl/libwww-perl + dev-perl/Graph + dev-perl/Text-Shellwords + >=sci-libs/io_lib-1.8.12b-r1 + !=sci-libs/io_lib-1.9* + gd? ( + >=dev-perl/GD-1.32-r1 + dev-perl/SVG + dev-perl/GD-SVG + ) + mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )" + +src_compile() { + yes "" | perl Makefile.PL ${myconf} \ + PREFIX=${D}/usr INSTALLDIRS=vendor +} + +src_test() { + perl-module_src_test || die "Test failed" +} + +src_install() { + mydoc="AUTHORS BUGS FAQ" + perl-module_src_install +} diff --git a/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1 b/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1 new file mode 100644 index 000000000000..299158ff7ff2 --- /dev/null +++ b/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1 @@ -0,0 +1,3 @@ +MD5 ba24f59a00c9919840a9b58f7fbd4d94 bioperl-1.5.1.tar.bz2 5538613 +RMD160 422bdd0dc17dd246ec1fc3ae6fe020705111892d bioperl-1.5.1.tar.bz2 5538613 +SHA256 696c8bd162bc79fa3c75eeb63bb42f8cbcbb4b72de4dcb3bec7ea7a293506f6c bioperl-1.5.1.tar.bz2 5538613 |