diff options
Diffstat (limited to 'sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch')
| -rw-r--r-- | sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch | 30 |
1 files changed, 20 insertions, 10 deletions
diff --git a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch index 78d0c254f25d..90c45632eada 100644 --- a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch +++ b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch @@ -1,6 +1,12 @@ ---- HMMER-2.3.2.650/configure.ac -+++ HMMER-2.3.2.650/configure.ac -@@ -635,33 +635,6 @@ + configure.ac | 49 +++++++------------------------------------------ + src/Makefile.am | 6 ++---- + 2 files changed, 9 insertions(+), 46 deletions(-) + +diff --git a/configure.ac b/configure.ac +index 037ca00..f539ab6 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -635,33 +635,6 @@ AS_CASE([${host_os}], @@ -34,7 +40,7 @@ dnl FIXME: This does no longer seem required with Autoconf 2.67? dnl Intel MacOSX 10.6 puts X11 in a non-standard place dnl AS_IF([test "x${with_x}" != "xno"], -@@ -737,21 +710,6 @@ +@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL @@ -56,21 +62,25 @@ dnl Test if --enable-localforce given locallink="no" embprefix="/usr/local" -@@ -874,6 +832,11 @@ +@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) +AS_IF([test "x${enable_systemlibs}" = "xyes"], +[ +dnl using system libraries -+ PKG_CHECK_MODULES([PLPLOT], [plplotd]) ++ PKG_CHECK_MODULES([PLPLOT], [plplotd], ++ [],[PKG_CHECK_MODULES([PLPLOT], [plplot])] ++ ) +]) # Enable the purify tool: --enable-purify, sets CC and LIBTOOL ---- HMMER-2.3.2.650/src/Makefile.am -+++ HMMER-2.3.2.650/src/Makefile.am -@@ -17,9 +17,7 @@ +diff --git a/src/Makefile.am b/src/Makefile.am +index dc789bc..5a8c38e 100644 +--- a/src/Makefile.am ++++ b/src/Makefile.am +@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \ -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ -I../../../ajax/acd -I../../../plplot else @@ -81,7 +91,7 @@ endif if ISSHARED -@@ -67,5 +65,5 @@ +@@ -67,5 +65,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ $(XLIB) else LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ |