diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/plink/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/plink/Manifest | 36 | ||||
| -rw-r--r-- | sci-biology/plink/metadata.xml | 10 | ||||
| -rw-r--r-- | sci-biology/plink/plink-1.90_pre140514.ebuild | 18 |
4 files changed, 36 insertions, 37 deletions
diff --git a/sci-biology/plink/ChangeLog b/sci-biology/plink/ChangeLog index 92575ce552f8..4837ece0862c 100644 --- a/sci-biology/plink/ChangeLog +++ b/sci-biology/plink/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/plink -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.17 2015/04/07 14:34:12 jlec Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.18 2015/06/09 13:37:57 jlec Exp $ + + 09 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml, + plink-1.90_pre140514.ebuild: + Fix build problems related to missing blas, bug #530670; bug #550142 22 Sep 2014; Justin Lecher <jlec@gentoo.org> plink-1.90_pre140514.ebuild: Rename USE lapack -> blas, fixing build problems, #514106 @@ -38,4 +42,3 @@ -plink-1.06.ebuild, +plink-1.07-r1.ebuild, metadata.xml: Fixes for #335975, respecting LDFLAGS/CXXFLAGS, supporting lapack, making R support optional - diff --git a/sci-biology/plink/Manifest b/sci-biology/plink/Manifest index 840a59ce578f..401a1952458e 100644 --- a/sci-biology/plink/Manifest +++ b/sci-biology/plink/Manifest @@ -6,25 +6,25 @@ AUX plink-1.07-gcc47.patch 1825 SHA256 f3019efb2ea2f979971777b29b449a85dc404ac06 DIST plink-1.07-src.zip 2257297 SHA256 4af56348443d0c6a1db64950a071b1fcb49cc74154875a7b43cccb4b6a7f482b SHA512 493f9f32ecd9eb20c5d11dc8ac98c47a9e695059cec3d1ad6f17465b71609577032368c0fee0d3d564e9451c3c07761e444717bec0f4628caefc587fceb1f6c3 WHIRLPOOL 01e69f605e1b52c6087dd75b506a7705d3bdb8e7dfdd0158e125f4fc4d962fad70c4ec430a139029b3b4ae91b822eb10123fab062c6552b946ec96ca7caf37da DIST plink-1.90_pre140514.zip 822157 SHA256 c6f93153d079b4b7f9ae4a51a3b4dcc7bc5ed60b408d39fce6234b98570b8ea7 SHA512 679f1e136b11f35f1d49636bc44ffd17e72e4e38edc5daa270cd963ca39f7b8a80f31905a94de517059e5b3ea7a6bf518ae34a5c2af8a05c530bd6df771606c4 WHIRLPOOL ebcccc1dc0461afd973aa63313237bfd5d904543785115fa71f3af1925d8bb21da15bd0baf60e38f4da534c8c554202a7af6c642b274ca9a458fc0035c2758d2 EBUILD plink-1.07-r1.ebuild 1263 SHA256 c9fcf415f3ec686c453a5c88541fad85cbe0a184fcece98dc6481c14ad0d1a3b SHA512 2e6adaa85ad20e1171e6af6e66b087db16bf7c1f42285ffb1aada31759b3f537bd273f8c144ad7bcd481e40432ef0a523037663499c832e3914497b8c6cd950d WHIRLPOOL 5d2a58bfcf2a9116891448fa8c8484c97268254a403f1ed91c7f58185b35662931f3b26a611c77e8312ab27df42f1a48b5624b056f916b33652e1e881053ec24 -EBUILD plink-1.90_pre140514.ebuild 1358 SHA256 d8ba21c598fedb5409c0c1842ee0bc784642b8aefa3369eaf7901f0be5ecb239 SHA512 2f2bb9e55916c94ab4e1d44e3ae947a6ac259a08e698e493931022c4bdc064977bb3d1b2e009155aa98d80c407ec450d3fb1e072870adf3778b021a104143cac WHIRLPOOL a669a1e3148f8fb6a25e5e16125b7c4d446c281aa0a1832f797ab2edee5714dd09e0d01fa18e6ef914b5531e4940a874ebff4504e8b455b02c2949c7bf88a5f4 -MISC ChangeLog 1587 SHA256 2bc41740a6c0ba65df6e9cc056166f0de857d6d43307e13943a6a3618ba7cfe4 SHA512 69c3e5335964923256dfafa3644450aea0ec6ce8826d8ff296c7e3bcb9d4a2acfee4cd4798b8a0d2c0534d5f86a71df15d3748846cfa1567180ec151b875b9e8 WHIRLPOOL b62cef22366586441326857b82afba2677402bf1fb268a60d4ddb4a1845c84e3e1cd9becc305c825c34a982770ca8e409221ea41557283efd4467f8293cb336f -MISC metadata.xml 348 SHA256 8a1f2924de09c075cd7469994451860153fa5947db32eef46f83aac2552f4374 SHA512 4c483e275b788e5aefded48d9d404ce390a8c71c7f6a1aaff531d743e6d7e5a71685411c8588548eddc83ff82eb3861c3fc23c69ed769defbed59ce56df3dd02 WHIRLPOOL 2d56efcff46261269c7ec0bff888b0ea4d2b31142f26114727478f234148377de48d95b8f53f024be3cf017a170a36664868f1c5d70357809fbef78cb06a2644 +EBUILD plink-1.90_pre140514.ebuild 1247 SHA256 41e28f9a2e91bae491a56750f96140f637ac691e978a77ed019324b852bc2bc1 SHA512 9939abe6d479123d2a4ac8bf09330af83fc7f2d5bc5a785033341219397040480e83567bfe1dadf7e6c2561fd09cf54d5d0fd4be1a09d05fd3ae1882927aeece WHIRLPOOL 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version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <herd>sci-biology</herd> - <use> - <flag name="webcheck"> + <herd>sci-biology</herd> + <use> + <flag name="webcheck"> add support for online update checking every time the program starts </flag> - <flag name="R"> + <flag name="R"> add support R language </flag> - </use> + </use> </pkgmetadata> diff --git a/sci-biology/plink/plink-1.90_pre140514.ebuild b/sci-biology/plink/plink-1.90_pre140514.ebuild index 67b3bd31aa18..9070c01e6128 100644 --- a/sci-biology/plink/plink-1.90_pre140514.ebuild +++ b/sci-biology/plink/plink-1.90_pre140514.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild,v 1.2 2014/09/22 07:20:31 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild,v 1.3 2015/06/09 13:37:57 jlec Exp $ EAPI=5 @@ -12,18 +12,17 @@ SRC_URI="http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.z LICENSE="GPL-2" SLOT="0" -IUSE="blas" KEYWORDS="~amd64 ~x86" +IUSE="" DEPEND=" app-arch/unzip virtual/pkgconfig" RDEPEND=" sys-libs/zlib - blas? ( - virtual/cblas - virtual/lapack - )" + virtual/cblas + virtual/lapack + " S="${WORKDIR}/" @@ -31,8 +30,6 @@ S="${WORKDIR}/" # Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. src_prepare() { - use blas || sed -i '/NO_blas =/s/$/1/' "${S}/Makefile" || die - sed \ -e 's:zlib-1.2.8/zlib.h:zlib.h:g' \ -i *.{c,h} || die @@ -46,12 +43,11 @@ src_prepare() { } src_compile() { - local blas emake \ CXX=$(tc-getCXX) \ CFLAGS="${CFLAGS}" \ ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \ - BLASFLAGS="$(usex blas "$($(tc-getPKG_CONFIG) --libs lapack cblas)" "")" + BLASFLAGS="$($(tc-getPKG_CONFIG) --libs lapack cblas)" } src_install() { |