blob: 7688b2fa65a80ae5f01cdb9021e00ad9d13bba24 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
|
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biojava/biojava-1.6.ebuild,v 1.2 2015/08/05 21:01:52 monsieurp Exp $
# TODO:
# -Fix javadoc generation OutOfMemoryError
# -Add launchers for 2 apps in biojava-apps.jar
# -Decide on demo packaging. (Whether to install its jar as done or sources by examples USE flag)
EAPI=2
#JAVA_PKG_IUSE="doc source test"
JAVA_PKG_IUSE="source test"
inherit eutils java-pkg-2 java-ant-2
DESCRIPTION="A Java framework for processing biological data"
HOMEPAGE="http://biojava.org"
SRC_URI="http://www.biojava.org/download/bj16/all/${P}-all.jar"
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
COMMON_DEPEND="dev-java/jgrapht:0
dev-java/commons-cli:1
dev-java/commons-dbcp:0
dev-java/commons-pool:0
dev-java/bytecode:0"
RDEPEND=">=virtual/jre-1.5
${COMMON_DEPEND}"
DEPEND=">=virtual/jdk-1.5
app-arch/unzip
${COMMON_DEPEND}
test?
(
dev-java/junit:4
dev-java/ant-junit4
)"
S="${WORKDIR}/biojava-live_${PV}"
JAVA_ANT_IGNORE_SYSTEM_CLASSES="true"
src_prepare() {
einfo "Removing budled jars."
find . -name "*.jar" -print -delete
rm -r doc/*
java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar
java-pkg_jar-from commons-cli-1
java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar
java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar
java-pkg_jar-from bytecode
}
src_compile() {
#ANT_OPTS="${ANT_OPTS} -Xmx512m"
eant package-biojava package-biojava package-demos package-apps #$(use_doc javadocs-all)
}
src_install() {
java-pkg_newjar ant-build/biojava.jar ${PN}.jar
java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar
java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar
#use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos}
use source && java-pkg_dosrc {src,apps,demos}/org
}
src_test() {
java-pkg_jar-from junit-4 junit.jar junit-4.4.jar
ANT_TASKS="ant-junit4" eant runtests
}
|
GitWeb
