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# ChangeLog for sci-biology/bioperl
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.58 2015/05/27 10:14:19 ago Exp $
27 May 2015; Agostino Sarubbo <ago@gentoo.org> bioperl-1.6.9.ebuild:
Stable for amd64, wrt bug #539426
26 Apr 2015; Pacho Ramos <pacho@gentoo.org> bioperl-1.6.9.ebuild:
x86 stable wrt bug #539426
18 Apr 2015; Andreas K. Huettel <dilfridge@gentoo.org> bioperl-1.6.9.ebuild:
Use REQUIRED_USE instead of dieing on invalid use-flag combination, bug
547022
08 Apr 2015; Justin Lecher <jlec@gentoo.org> bioperl-1.6.9.ebuild,
bioperl-9999-r1.ebuild, metadata.xml:
Add missing deps, bug #545472
09 Aug 2014; Mikle Kolyada <zlogene@gentoo.org> bioperl-1.6.0-r2.ebuild,
bioperl-1.6.9.ebuild, bioperl-9999-r1.ebuild:
Bump to EAPI=5 (bug #478714)
10 Jul 2014; Andreas K. Huettel <dilfridge@gentoo.org> bioperl-1.6.9.ebuild:
Depend on virtual/perl-x instead of perl-core/x
28 Oct 2012; Justin Lecher <jlec@gentoo.org> -bioperl-1.5.1-r1.ebuild,
-bioperl-1.6.1.ebuild:
Drop versions with unsolvable dep sets
12 Apr 2012; Torsten Veller <tove@gentoo.org> metadata.xml:
Fix cpan distribution in metadata.xml
24 Mar 2012; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
Drop alpha/ia64/sparc keywords
20 Sep 2011; Michał Górny <mgorny@gentoo.org> bioperl-9999-r1.ebuild:
Migrate to git-2.
*bioperl-1.6.9 (18 Jul 2011)
18 Jul 2011; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.4.ebuild,
+bioperl-1.6.9.ebuild:
Version bump, drop old
*bioperl-9999-r1 (17 Oct 2010)
17 Oct 2010; Andrey Kislyuk <weaver@gentoo.org> -bioperl-9999.ebuild,
+bioperl-9999-r1.ebuild:
Update live ebuild for upstream svm->github migration, bug 338362. Thanks
to Joel Berendzen
02 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild:
Fix typo
01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild:
Fix typo
*bioperl-1.6.1 (01 Oct 2009)
01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.1.ebuild:
Version bump
11 Jun 2009; Markus Meier <maekke@gentoo.org> bioperl-1.6.0-r2.ebuild:
amd64 stable, bug #270585
02 Jun 2009; Christian Faulhammer <fauli@gentoo.org>
bioperl-1.6.0-r2.ebuild:
stable x86, bug 270585
24 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild,
bioperl-9999.ebuild:
Moved Bio-ASN1-EntrezGene to PDEPEND per bug 269583
13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-9999.ebuild:
Override depend on perl 5.10
13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild,
bioperl-9999.ebuild:
Remove module-build from RDEPEND (bug 246942)
*bioperl-1.6.0-r2 (08 Apr 2009)
08 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0-r1.ebuild,
+bioperl-1.6.0-r2.ebuild, bioperl-9999.ebuild:
Revision bump - add missing dependencies
24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Giving up maintainership of this package.
*bioperl-9999 (16 Mar 2009)
*bioperl-1.6.0-r1 (16 Mar 2009)
16 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0.ebuild,
+bioperl-1.6.0-r1.ebuild, +bioperl-9999.ebuild:
Rewrite, commit split 1.6.0 packages and live ebuilds for packages in 1.6.0
release. Bug 179110.
*bioperl-1.6.0 (12 Mar 2009)
12 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.0.ebuild:
Testing release for revision bump
15 Jul 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
x86 stable wrt #222727
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Stable on amd64.
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixed test suite.
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixed dependency on io_lib.
02 Jan 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
Re-add ~alpha/~ia64
10 Dec 2006; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixed Perl dependencies (see bug #157672).
22 Oct 2006; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild,
-bioperl-1.5.1.ebuild, bioperl-1.5.1-r1.ebuild:
Fixed description. Removed old ebuild.
30 Sep 2006; Jason Wever <weeve@gentoo.org> bioperl-1.5.1.ebuild,
bioperl-1.5.1-r1.ebuild:
Added ~sparc keyword wrt bug #149577.
30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixing dependency on io_lib (thanks to Weeve for pointing this out).
*bioperl-1.5.1-r1 (30 Sep 2006)
30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
+bioperl-1.5.1-r1.ebuild:
Added dependency on io_lib for the Staden extensions. Dropping ~alpha, ~ia64
and ~sparc keywords (see bug #149577).
*bioperl-1.5.1 (13 Sep 2006)
13 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +bioperl-1.5.1.ebuild:
New upstream version. Thanks to Greg Wilson <gdw1@cornell.edu>, Martin
Mokrejs <mmokrejs@ribosome.natur.cuni.cz> and Neil Shephard
<nshephard@gmail.com> for their work (see bug #79459).
18 Aug 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
Marking amd64 stable
30 Mar 2006; Aron Griffis <agriffis@gentoo.org> bioperl-1.4.ebuild:
Mark 1.4 ~ia64
13 Feb 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
Virtuals for perl-core
28 Nov 2005; <mcumming@gentoo.org> bioperl-1.0.2.ebuild,
bioperl-1.2.2.ebuild, bioperl-1.2.3.ebuild, bioperl-1.2.ebuild,
bioperl-1.4.ebuild:
Switched from perl-module to perl-app eclass
19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Maintainer changed from Stephen Diener (MIA) to Olivier Fisette.
05 Aug 2005; Herbie Hopkins <herbs@gentoo.org> bioperl-1.4.ebuild:
Marked ~amd64 wrt bug #101339.
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
30 Mar 2005; Gustavo Zacarias <gustavoz@gentoo.org> bioperl-1.4.ebuild:
Keyworded ~sparc
09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild:
Added regression test support. Fixes bug #38169.
29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
Change encoding to UTF-8 for GLEP 31 compliance
*bioperl-1.2 (23 Dec 2004)
23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+files/biodbgff-enable-1.2.2.patch, +files/biodbgff-enable-1.2.3.patch,
+files/bioperl-1.2-manpage.diff, +files/domanpages-1.2.2.patch,
+bioperl-1.0.2.ebuild, +bioperl-1.2.2.ebuild, +bioperl-1.2.3.ebuild,
+bioperl-1.2.ebuild, +bioperl-1.4.ebuild:
Moved from app-sci/bioperl to sci-biology/bioperl.
30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild,
bioperl-1.0.2.ebuild:
Q.A.: Fixed RDEPEND=$DEPEND, fixed LICENSE.
03 Aug 2004; David Holm <dholm@gentoo.org> bioperl-1.4.ebuild:
Added to ~ppc.
03 Jul 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild:
Stable on alpha.
02 Jun 2004; Aron Griffis <agriffis@gentoo.org> bioperl-1.2.2.ebuild,
bioperl-1.2.3.ebuild:
Fix use invocation
05 May 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
bumped 1.4 to stable
05 May 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.2.ebuild:
Stable on alpha.
20 Apr 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild:
Added ~alpha to keywords.
14 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
removed src_test; fixes bug #38169, or at least works around it
*bioperl-1.4 (08 Jan 2004)
08 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
version bump
24 Nov 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.3.ebuild:
bump to stable.
*bioperl-1.2.3 (24 Oct 2003)
24 Oct 2003; <sediener@gentoo.org> bioperl-1.2.3.ebuild:
new release added.
*bioperl-1.2.2 (28 Aug 2003)
28 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild:
Bumped to stable x86
*bioperl-1.2.2 (02 Aug 2003)
02 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild,
files/biodbgff-enable-1.2.2.patch, files/domanpages-1.2.2.patch:
New Version thanks to Gontran Zepeda <gontran@gontran.net> in bug# 24467 :
Also fixes bug# 25079
*bioperl-1.2 (24 Apr 2003)
24 Apr 2003; Jon Portnoy <avenj@gentoo.org> bioperl-1.2.ebuild :
Version bump, ebuild submitted by Gontran Zepeda <gontran@gontran.net>
in bug #13826
*bioperl-1.0.2 (21 Dec 2002)
21 Dec 2002; Michael Cummings <mcummings@gentoo.org>
bioperl-1.0.2.ebuild:
Initial import. Ebuild submitted by Gontran Zepeda <gontran@gontran.net>
Bug 11498
|
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