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diff --git a/Makefile b/Makefile
index 53e5c5b..a2d3feb 100644
--- a/Makefile
+++ b/Makefile
@@ -109,17 +109,17 @@ MPOBJ = mpviterbi.o mp-dbviterbi.o
all: $(PROGS) tRNAscanSE setpaths
covels-SE: $(OBJ) scan_main.o
- $(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
+ $(CC) $(CFLAGS) $(RFLAGS) $(LDFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
coves-SE: $(OBJ) score_main.o
- $(CC) $(CFLAGS) $(RFLAGS) -o coves-SE score_main.o $(OBJ) $(LIBS)
+ $(CC) $(CFLAGS) $(RFLAGS) $(LDFLAGS) -o coves-SE score_main.o $(OBJ) $(LIBS)
eufindtRNA: $(SQUIDOBJ) pavesi.o eufind_main.o
- $(CC) $(CFLAGS) -o eufindtRNA eufind_main.o \
+ $(CC) $(CFLAGS) $(LDFLAGS) -o eufindtRNA eufind_main.o \
pavesi.o $(SQUIDOBJ) $(LIBS)
trnascan-1.4: trnascan.o
- $(CC) $(CFLAGS) -DTSCANDIR=\"$(LIBDIR)\" -o trnascan-1.4 trnascan.c
+ $(CC) $(CFLAGS) -DTSCANDIR=\"$(LIBDIR)\" $(LDFLAGS) -o trnascan-1.4 trnascan.c
tRNAscanSE:
$(PERLDIR)/$(PERLBIN) checkversion.pl
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