proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

8 files changed, 471 insertions, 0 deletions

diff --git a/sci-chemistry/pymol-apbs-plugin/Manifest b/sci-chemistry/pymol-apbs-plugin/Manifest
new file mode 100644
index 000000000000..b2d73f85090c
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/Manifest
@@ -0,0 +1,4 @@
+DIST pymol-apbs-plugin-0_p15.py 104351 SHA256 c5a259ddc1931f1ec4efe0ffc3ae9e9ac4a84a28c83a4f93a06ebb7c1bef0c1d
+DIST pymol-apbs-plugin-0_p18.py 108766 SHA256 ec09c5a0903ac965cc29fcf0a3c1999bd939f9791d037915596092698855d12c
+DIST pymol-apbs-plugin-2.1_p24.py 113049 SHA256 d51bb1bbbf641777ee36713c0c47696d7906179e42cac8cdd0e8e156ef081c9f SHA512 49141ea7e4a3a3430d342fb4fbb497d522ce6485c6d9e3527414519574eab7b8218fe240f26920013676528c40059a46341d58153bfe9d05bf747ead926b2cfd WHIRLPOOL 17a4f9ed9670b9a7f82395a9cf1ad465635f840b7389c10ad8c8eae3262c3696383bbacadf5aee9fed817eff7370008cc85a1666896fed56dffb0163e4c3d7e1
+DIST pymol-apbs-plugin-2.1_p26.py 113086 SHA256 552242b4f5b47f298eeb0616e0d51924b4a7649dc8a16e4809e923dbcb97738d SHA512 3561d077875a1880d6badccf835db3d17e0c45416accd6127cbef7c550711908b47ccb392563e3d29ecb7d6527c098584eeabb6490d1033720ed7efe751d0fb0 WHIRLPOOL dccd32b0193e74e505d69922b441323fb24b0ba30aa85f4d69b94663ab406a57b772985ca2c56146e2c4b929f73b321095c3ae2caf95f297f14d8b31671f475e
diff --git a/sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch b/sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch
new file mode 100644
index 000000000000..c3675cf4c0d0
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch
@@ -0,0 +1,176 @@
+--- pymol-apbs-plugin-2.1_p26.py.orig        2013-08-16 20:29:27.000000000 -0400
++++ pymol-apbs-plugin-2.1_p26.py        2013-08-16 20:31:35.000000000 -0400
+@@ -560,7 +560,8 @@
+         # Set up the Main page
+         page = self.notebook.add('Main')
+         group = Pmw.Group(page,tag_text='Main options')
+-        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
+         self.selection = Pmw.EntryField(group.interior(),
+                                         labelpos='w',
+                                         label_text='Selection to use: ',
+@@ -606,7 +607,8 @@
+         page = self.notebook.add('Configuration')
+ 
+         group = Pmw.Group(page,tag_text='Dielectric Constants')
+-        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+         group.grid(column=0, row=0)
+         self.interior_dielectric = Pmw.EntryField(group.interior(),labelpos='w',
+                                    label_text = 'Protein Dielectric:',
+@@ -625,7 +627,8 @@
+             #entry.pack(side='left',fill='both',expand=1,padx=4) # side-by-side
+             entry.pack(fill='x',expand=1,padx=4,pady=1) # vertical
+         group = Pmw.Group(page,tag_text='Other')
+-        group.pack(fill='both',expand=1, padx=4, pady=5)
++        #group.pack(fill='both',expand=1, padx=4, pady=5)
++        group.grid(padx=4, pady=5, sticky=(N, S, E, W))
+         group.grid(column=1, row=1,columnspan=4)
+         self.max_mem_allowed = Pmw.EntryField(group.interior(),labelpos='w',
+                                               label_text = 'Maximum Memory Allowed (MB):',
+@@ -683,7 +686,8 @@
+ 
+ 
+         group = Pmw.Group(page,tag_text='Ions')
+-        group.pack(fill='both',expand=1, padx=4, pady=5)
++        #group.pack(fill='both',expand=1, padx=4, pady=5)
++        group.grid(padx=4, pady=5, sticky=(N, S, E, W))
+         group.grid(column=0, row=1, )
+         self.ion_plus_one_conc = Pmw.EntryField(group.interior(),
+                                                 labelpos='w',
+@@ -742,7 +746,8 @@
+             entry.pack(fill='x',expand=1,padx=4)
+ 
+         group = Pmw.Group(page,tag_text = 'Coarse Mesh Length')
+-        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+         group.grid(column = 1, row = 0)
+         for coord in 'x y z'.split():
+             setattr(self,'grid_coarse_%s'%coord,Pmw.EntryField(group.interior(),
+@@ -757,7 +762,8 @@
+ 
+ 
+         group = Pmw.Group(page,tag_text = 'Fine Mesh Length')
+-        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+         group.grid(column = 2, row = 0)
+         for coord in 'x y z'.split():
+             setattr(self,'grid_fine_%s'%coord,Pmw.EntryField(group.interior(),
+@@ -772,7 +778,8 @@
+ 
+ 
+         group = Pmw.Group(page,tag_text = 'Grid Center')
+-        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+         group.grid(column = 3, row = 0)
+         for coord in 'x y z'.split():
+             setattr(self,'grid_center_%s'%coord,Pmw.EntryField(group.interior(),
+@@ -786,7 +793,8 @@
+             getattr(self,'grid_center_%s'%coord).pack(fill='x', expand=1, padx=4, pady=1)
+ 
+         group = Pmw.Group(page,tag_text = 'Grid Points')
+-        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
++        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+         group.grid(column = 4, row = 0)
+         for coord in 'x y z'.split():
+             setattr(self,'grid_points_%s'%coord,Pmw.EntryField(group.interior(),
+@@ -804,7 +812,8 @@
+         page.grid_columnconfigure(5,weight=1)
+         page = self.notebook.add('Program Locations')
+         group = Pmw.Group(page,tag_text='Locations')
+-        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
+         def quickFileValidation(s):
+             if s == '': return Pmw.PARTIAL
+             elif os.path.isfile(s): return Pmw.OK
+@@ -867,7 +876,8 @@
+         
+         page = self.notebook.add('Temp File Locations')
+         group = Pmw.Group(page,tag_text='Locations')
+-        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
+         self.pymol_generated_pqr_filename = Pmw.EntryField(group.interior(),
+                                                            labelpos = 'w',
+                                                            label_pyclass = FileDialogButtonClassFactory.get(self.setPymolGeneratedPqrFilename),
+@@ -915,17 +925,20 @@
+         page = self.notebook.add('Visualization (1)')
+         group = VisualizationGroup(page,tag_text='Visualization',visgroup_num=1)
+         self.visualization_group_1 = group
+-        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
+ 
+         page = self.notebook.add('Visualization (2)')
+         group = VisualizationGroup(page,tag_text='Visualization',visgroup_num=2)
+         self.visualization_group_2 = group
+-        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
+ 
+         # Create a couple of other empty pages
+         page = self.notebook.add('About')
+         group = Pmw.Group(page, tag_text='About PyMOL APBS Tools')
+-        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        #group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
++        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
+         text = """This plugin integrates PyMOL (http://PyMOL.org/) with APBS (http://www.poissonboltzmann.org/apbs/).
+ 
+ Documentation may be found at
+@@ -2158,7 +2171,8 @@
+             self.update_buttonbox = Pmw.ButtonBox(self.mm_group.interior(), padx=0)
+             self.update_buttonbox.pack(side=LEFT)
+             self.update_buttonbox.add('Update',command=self.refresh)
+-            self.mm_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP)
++            #self.mm_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP)
++            self.mm_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+ 
+             self.ms_group = Pmw.Group(self.interior(),tag_text='Molecular Surface')
+             self.ms_buttonbox = Pmw.ButtonBox(self.ms_group.interior(), padx=0)
+@@ -2209,7 +2223,8 @@
+             bars = (self.mol_surf_low,self.mol_surf_middle,self.mol_surf_high)
+             Pmw.alignlabels(bars)
+             for bar in bars: bar.pack(side=LEFT)
+-            self.ms_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
++            #self.ms_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
++            self.ms_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+ 
+             self.fl_group = Pmw.Group(self.interior(),tag_text='Field Lines')
+             self.fl_buttonbox = Pmw.ButtonBox(self.fl_group.interior(), padx=0)
+@@ -2224,7 +2239,8 @@
+                                   text = """Follows same coloring as surface.""",
+                                   )
+             label.pack()
+-            self.fl_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP)
++            #self.fl_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP)
++            self.fl_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+ 
+             self.pi_group = Pmw.Group(self.interior(),tag_text='Positive Isosurface')
+             self.pi_buttonbox = Pmw.ButtonBox(self.pi_group.interior(), padx=0)
+@@ -2243,7 +2259,8 @@
+                                             entryfield_validate = {'validator' : 'real', 'min':0}
+                                             )
+             self.pos_surf_val.pack(side=LEFT)
+-            self.pi_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
++            #self.pi_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
++            self.pi_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+ 
+             self.ni_group = Pmw.Group(self.interior(),tag_text='Negative Isosurface')
+             self.ni_buttonbox = Pmw.ButtonBox(self.ni_group.interior(), padx=0)
+@@ -2262,7 +2279,8 @@
+                                             entryfield_validate = {'validator' : 'real', 'max':0}
+                                             )
+             self.neg_surf_val.pack(side=LEFT)
+-            self.ni_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
++            #self.ni_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
++            self.ni_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
+ 
+ 
+ 
diff --git a/sci-chemistry/pymol-apbs-plugin/metadata.xml b/sci-chemistry/pymol-apbs-plugin/metadata.xml
new file mode 100644
index 000000000000..ae9ec7c5f6a4
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-0_p15.ebuild b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-0_p15.ebuild
new file mode 100644
index 000000000000..8609778501ce
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-0_p15.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="3"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit python
+
+MY_PV="${PV##*_p}"
+
+DESCRIPTION="APBS plugin for pymol"
+HOMEPAGE="http://sourceforge.net/projects/pymolapbsplugin/"
+SRC_URI="http://pymolapbsplugin.svn.sourceforge.net/viewvc/pymolapbsplugin/trunk/src/apbsplugin.py?revision=${MY_PV} -> ${P}.py"
+
+SLOT="0"
+KEYWORDS="~amd64 ~ppc x86 ~amd64-linux ~x86-linux"
+LICENSE="pymol"
+IUSE=""
+
+RDEPEND="
+	sci-chemistry/apbs
+	sci-chemistry/pdb2pqr
+	!<sci-chemistry/pymol-1.2.2-r1"
+DEPEND="${RDEPEND}"
+RESTRICT_PYTHON_ABIS="3.*"
+
+src_unpack() {
+	mkdir "${S}"
+	cp "${DISTDIR}"/${P}.py "${S}"/
+	python_copy_sources
+}
+
+src_install() {
+	installation() {
+		sed \
+			-e "s:^APBS_BINARY_LOCATION.*:APBS_BINARY_LOCATION = \"${EPREFIX}/usr/bin/apbs\":g" \
+			-e "s:^APBS_PSIZE_LOCATION.*:APBS_PSIZE_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/src/\":g" \
+			-e "s:^APBS_PDB2PQR_LOCATION.*:APBS_PDB2PQR_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/\":g" \
+			-e "s:^TEMPORARY_FILE_DIR.*:TEMPORARY_FILE_DIR = \"./\":g" \
+			-i ${P}.py
+
+		insinto $(python_get_sitedir)/pmg_tk/startup/
+		newins ${P}.py apbs_tools.py || die
+	}
+	python_execute_function -s installation
+}
+
+pkg_postinst() {
+	python_mod_optimize pmg_tk/startup/apbs_tools.py
+}
+
+pkg_postrm() {
+	python_mod_cleanup pmg_tk/startup/apbs_tools.py
+}
diff --git a/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-0_p18.ebuild b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-0_p18.ebuild
new file mode 100644
index 000000000000..11596fe54cbf
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-0_p18.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="3"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit python
+
+MY_PV="${PV##*_p}"
+
+DESCRIPTION="APBS plugin for pymol"
+HOMEPAGE="http://sourceforge.net/projects/pymolapbsplugin/"
+SRC_URI="http://pymolapbsplugin.svn.sourceforge.net/viewvc/pymolapbsplugin/trunk/src/apbsplugin.py?revision=${MY_PV} -> ${P}.py"
+
+SLOT="0"
+KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
+LICENSE="pymol"
+IUSE=""
+
+RDEPEND="
+	sci-chemistry/apbs
+	sci-chemistry/pdb2pqr
+	!<sci-chemistry/pymol-1.2.2-r1"
+DEPEND="${RDEPEND}"
+RESTRICT_PYTHON_ABIS="3.*"
+
+src_unpack() {
+	mkdir "${S}"
+	cp "${DISTDIR}"/${P}.py "${S}"/
+	python_copy_sources
+}
+
+src_install() {
+	installation() {
+		sed \
+			-e "s:^APBS_BINARY_LOCATION.*:APBS_BINARY_LOCATION = \"${EPREFIX}/usr/bin/apbs\":g" \
+			-e "s:^APBS_PSIZE_LOCATION.*:APBS_PSIZE_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/src/\":g" \
+			-e "s:^APBS_PDB2PQR_LOCATION.*:APBS_PDB2PQR_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/\":g" \
+			-e "s:^TEMPORARY_FILE_DIR.*:TEMPORARY_FILE_DIR = \"./\":g" \
+			-i ${P}.py
+
+		insinto $(python_get_sitedir)/pmg_tk/startup/
+		newins ${P}.py apbs_tools.py || die
+	}
+	python_execute_function -s installation
+}
+
+pkg_postinst() {
+	python_mod_optimize pmg_tk/startup/apbs_tools.py
+}
+
+pkg_postrm() {
+	python_mod_cleanup pmg_tk/startup/apbs_tools.py
+}
diff --git a/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p24.ebuild b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p24.ebuild
new file mode 100644
index 000000000000..627780c1ff39
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p24.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="3"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit python
+
+MY_PV="${PV##*_p}"
+
+DESCRIPTION="APBS plugin for pymol"
+HOMEPAGE="http://sourceforge.net/projects/pymolapbsplugin/"
+SRC_URI="http://pymolapbsplugin.svn.sourceforge.net/viewvc/pymolapbsplugin/trunk/src/apbsplugin.py?revision=${MY_PV} -> ${P}.py"
+
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+LICENSE="pymol"
+IUSE=""
+
+RDEPEND="
+	sci-chemistry/apbs
+	sci-chemistry/pdb2pqr
+	!<sci-chemistry/pymol-1.2.2-r1"
+DEPEND="${RDEPEND}"
+RESTRICT_PYTHON_ABIS="3.*"
+
+src_unpack() {
+	mkdir "${S}"
+	cp "${DISTDIR}"/${P}.py "${S}"/
+	python_copy_sources
+}
+
+src_install() {
+	installation() {
+		sed \
+			-e "s:^APBS_BINARY_LOCATION.*:APBS_BINARY_LOCATION = \"${EPREFIX}/usr/bin/apbs\":g" \
+			-e "s:^APBS_PSIZE_LOCATION.*:APBS_PSIZE_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/src/\":g" \
+			-e "s:^APBS_PDB2PQR_LOCATION.*:APBS_PDB2PQR_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/\":g" \
+			-e "s:^TEMPORARY_FILE_DIR.*:TEMPORARY_FILE_DIR = \"./\":g" \
+			-i ${P}.py
+
+		insinto $(python_get_sitedir)/pmg_tk/startup/
+		newins ${P}.py apbs_tools.py || die
+	}
+	python_execute_function -s installation
+}
+
+pkg_postinst() {
+	python_mod_optimize pmg_tk/startup/apbs_tools.py
+}
+
+pkg_postrm() {
+	python_mod_cleanup pmg_tk/startup/apbs_tools.py
+}
diff --git a/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p26-r1.ebuild b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p26-r1.ebuild
new file mode 100644
index 000000000000..819687b121bc
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p26-r1.ebuild
@@ -0,0 +1,56 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils python-r1
+
+MY_PV="${PV##*_p}"
+
+DESCRIPTION="APBS plugin for pymol"
+HOMEPAGE="http://sourceforge.net/projects/pymolapbsplugin/"
+SRC_URI="http://sourceforge.net/p/pymolapbsplugin/code/${MY_PV}/tree/trunk/src/apbsplugin.py?format=raw -> ${P}.py"
+
+SLOT="0"
+KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
+LICENSE="pymol"
+IUSE=""
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+	${PYTHON_DEPS}
+	sci-chemistry/apbs
+	sci-chemistry/pdb2pqr
+	!<sci-chemistry/pymol-1.2.2-r1"
+DEPEND="${RDEPEND}"
+
+src_unpack() {
+	mkdir "${S}"
+	cp "${DISTDIR}"/${P}.py "${S}"/
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-tcltk8.6.patch
+	python_copy_sources
+}
+
+src_install() {
+	installation() {
+		cd "${BUILD_DIR}" || die
+		sed \
+			-e "s:^APBS_BINARY_LOCATION.*:APBS_BINARY_LOCATION = \"${EPREFIX}/usr/bin/apbs\":g" \
+			-e "s:^APBS_PSIZE_LOCATION.*:APBS_PSIZE_LOCATION = \"$(python_get_sitedir)/pdb2pqr/src/\":g" \
+			-e "s:^APBS_PDB2PQR_LOCATION.*:APBS_PDB2PQR_LOCATION = \"$(python_get_sitedir)/pdb2pqr/\":g" \
+			-e "s:^TEMPORARY_FILE_DIR.*:TEMPORARY_FILE_DIR = \"./\":g" \
+			${P}.py > apbs_tools.py || die
+
+		python_moduleinto pmg_tk/startup
+		python_domodule apbs_tools.py
+		python_optimize
+	}
+	python_parallel_foreach_impl installation
+}
diff --git a/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p26.ebuild b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p26.ebuild
new file mode 100644
index 000000000000..5f4c1affc3de
--- /dev/null
+++ b/sci-chemistry/pymol-apbs-plugin/pymol-apbs-plugin-2.1_p26.ebuild
@@ -0,0 +1,56 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils python-r1
+
+MY_PV="${PV##*_p}"
+
+DESCRIPTION="APBS plugin for pymol"
+HOMEPAGE="http://sourceforge.net/projects/pymolapbsplugin/"
+SRC_URI="http://sourceforge.net/p/pymolapbsplugin/code/${MY_PV}/tree/trunk/src/apbsplugin.py?format=raw -> ${P}.py"
+
+SLOT="0"
+KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+LICENSE="pymol"
+IUSE=""
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+	${PYTHON_DEPS}
+	sci-chemistry/apbs
+	sci-chemistry/pdb2pqr
+	!<sci-chemistry/pymol-1.2.2-r1"
+DEPEND="${RDEPEND}"
+
+src_unpack() {
+	mkdir "${S}"
+	cp "${DISTDIR}"/${P}.py "${S}"/
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-tcltk8.6.patch
+	python_copy_sources
+}
+
+src_install() {
+	installation() {
+		cd "${BUILD_DIR}" || die
+		sed \
+			-e "s:^APBS_BINARY_LOCATION.*:APBS_BINARY_LOCATION = \"${EPREFIX}/usr/bin/apbs\":g" \
+			-e "s:^APBS_PSIZE_LOCATION.*:APBS_PSIZE_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/src/\":g" \
+			-e "s:^APBS_PDB2PQR_LOCATION.*:APBS_PDB2PQR_LOCATION = \"${EPREFIX}/$(python_get_sitedir)/pdb2pqr/\":g" \
+			-e "s:^TEMPORARY_FILE_DIR.*:TEMPORARY_FILE_DIR = \"./\":g" \
+			${P}.py > apbs_tools.py
+
+		python_moduleinto pmg_tk/startup
+		python_domodule apbs_tools.py || die
+		python_optimize
+	}
+	python_parallel_foreach_impl installation
+}