diff options
| -rw-r--r-- | profiles/package.mask | 5 | ||||
| -rw-r--r-- | sci-chemistry/ghemical/Manifest | 1 | ||||
| -rw-r--r-- | sci-chemistry/ghemical/files/2.99.2-docs.patch | 22 | ||||
| -rw-r--r-- | sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch | 37 | ||||
| -rw-r--r-- | sci-chemistry/ghemical/ghemical-3.0.0.ebuild | 56 | ||||
| -rw-r--r-- | sci-chemistry/ghemical/metadata.xml | 20 |
6 files changed, 0 insertions, 141 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index 819ea3183a26..20aa9512581b 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -586,11 +586,6 @@ games-strategy/gwp # No revdeps, Removal in 30 days. sci-chemistry/gabedit -# David Seifert <soap@gentoo.org> (2020-01-21) -# Last release over 13 years ago, depends on EOL gtkglext, no revdeps. -# Bug #353119, #435676. Removal in 30 days. -sci-chemistry/ghemical - # Michał Górny <mgorny@gentoo.org> (2020-01-16) # The new version loses Python 2 support but does not introduce any real # changes. Let's mask it to reduce the noise, and hopefully try to get diff --git a/sci-chemistry/ghemical/Manifest b/sci-chemistry/ghemical/Manifest deleted file mode 100644 index d0ef08059211..000000000000 --- a/sci-chemistry/ghemical/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST ghemical-3.0.0.tar.gz 2196716 BLAKE2B 62008667c58cb058beb8eb3946bb96fb03aceff7cc93f64aecc697a7648946936208063b419aca57f740d5760a90d923d81f8cc8d80fb68bdf924b23cd2061b3 SHA512 d4dd0b063a4dea33fa7430e77a2da253c74079fd8b5f21e8c2b5da1383f3689b93305417e1bf0d4908b87c91afb33c3266dd6bd6fbcd768cc98614a3f730ee94 diff --git a/sci-chemistry/ghemical/files/2.99.2-docs.patch b/sci-chemistry/ghemical/files/2.99.2-docs.patch deleted file mode 100644 index 85f31dfd729f..000000000000 --- a/sci-chemistry/ghemical/files/2.99.2-docs.patch +++ /dev/null @@ -1,22 +0,0 @@ -diff --git a/docs/user-docs/Makefile.am b/docs/user-docs/Makefile.am -index 030f67c..dcb207b 100644 ---- a/docs/user-docs/Makefile.am -+++ b/docs/user-docs/Makefile.am -@@ -1,6 +1,6 @@ - SUBDIRS = images - --helpfilesdir = $(datadir)/ghemical/@APPVERSION@/user-docs -+helpfilesdir = $(datadir)/doc/ghemical-@APPVERSION@/html - helpfiles_DATA = *.css *.html - - EXTRA_DIST = $(helpfiles_DATA) -diff --git a/docs/user-docs/images/Makefile.am b/docs/user-docs/images/Makefile.am -index fae0ffd..a569151 100644 ---- a/docs/user-docs/images/Makefile.am -+++ b/docs/user-docs/images/Makefile.am -@@ -1,4 +1,4 @@ --helpimagesdir = $(datadir)/ghemical/@APPVERSION@/user-docs/images -+helpimagesdir = $(datadir)/doc/ghemical-@APPVERSION@/html/images - helpimages_DATA = *.png - - EXTRA_DIST = $(helpimages_DATA) diff --git a/sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch b/sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch deleted file mode 100644 index d3d80bbd00ba..000000000000 --- a/sci-chemistry/ghemical/files/3.0.0-fix-gcc9.patch +++ /dev/null @@ -1,37 +0,0 @@ -https://bugs.gentoo.org/687450 - -project.h:210:14: error: friend declaration of ‘bool ReadGPR_OLD(project&, std::istream&, bool, bool)’ specifies default arguments and isn’t a definition [-fpermissive] - 210 | friend bool ReadGPR_OLD(project &, istream &, bool, bool = false); ///< this is for the very old version. - | ^~~~~~~~~~~ - ---- a/src/project.h -+++ b/src/project.h -@@ -122,6 +122,12 @@ - graphical user interface. - */ - -+class project; -+bool ReadGPR_OLD(project &, istream &, bool, bool = false); -+bool ReadGPR_v100(project &, istream &, bool, bool = false); -+bool ReadGPR_v110(project &, istream &, bool, bool = false); -+bool ReadGPR(project &, istream &, bool, bool = false); -+ - class project : - public custom_transformer_client, - public model -@@ -207,11 +213,11 @@ - - // methods for file I/O : ReadGPR and WriteGPR are friend functions so that it would be easier to "borrow" them elsewhere... - // ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -- friend bool ReadGPR_OLD(project &, istream &, bool, bool = false); ///< this is for the very old version. -- friend bool ReadGPR_v100(project &, istream &, bool, bool = false); ///< this is for the version 1.00. -- friend bool ReadGPR_v110(project &, istream &, bool, bool = false); ///< this is for the version 1.10. -+ friend bool ReadGPR_OLD(project &, istream &, bool, bool); ///< this is for the very old version. -+ friend bool ReadGPR_v100(project &, istream &, bool, bool); ///< this is for the version 1.00. -+ friend bool ReadGPR_v110(project &, istream &, bool, bool); ///< this is for the version 1.10. - /// This is an input function for the v1.11 ghemical file format. -- friend bool ReadGPR(project &, istream &, bool, bool = false); -+ friend bool ReadGPR(project &, istream &, bool, bool); - - friend void WriteGPR_v100(project &, ostream &); ///< this is for the version 1.00. - /// This is an output function for the v1.11 ghemical file format. diff --git a/sci-chemistry/ghemical/ghemical-3.0.0.ebuild b/sci-chemistry/ghemical/ghemical-3.0.0.ebuild deleted file mode 100644 index 477c41439c28..000000000000 --- a/sci-chemistry/ghemical/ghemical-3.0.0.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit autotools desktop - -DESCRIPTION="Chemical quantum mechanics and molecular mechanics" -HOMEPAGE="http://bioinformatics.org/ghemical/" -SRC_URI="http://bioinformatics.org/ghemical/download/current/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="openbabel seamonkey threads" - -RDEPEND=" - dev-libs/glib:2 - gnome-base/libglade:2.0 - sci-chemistry/mpqc - >=sci-libs/libghemical-3.0.0:= - >=x11-libs/liboglappth-1.0.0:= - virtual/opengl - x11-libs/pango:0= - x11-libs/gtk+:2 - x11-libs/gtkglext:0= - openbabel? ( sci-chemistry/openbabel )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -PATCHES=( - "${FILESDIR}"/2.99.2-docs.patch - "${FILESDIR}"/3.0.0-fix-gcc9.patch -) - -src_prepare() { - default - eautoreconf -} - -src_configure() { - # With amd64, if you want gamess I recommend adding gamess and gtk-gamess to package.provided for now. - - # Change the built-in help browser. - sed -e "s|mozilla|$(usex seamonkey seamonkey firefox)|g" \ - -i src/gtk_app.cpp || die "sed failed for $(usex seamonkey seamonkey firefox)!" - - econf \ - $(use_enable openbabel) \ - $(use_enable threads) -} - -src_install() { - default - make_desktop_entry ghemical Ghemical /usr/share/ghemical/${PV}/pixmaps/ghemical.png -} diff --git a/sci-chemistry/ghemical/metadata.xml b/sci-chemistry/ghemical/metadata.xml deleted file mode 100644 index 90f25b17693e..000000000000 --- a/sci-chemistry/ghemical/metadata.xml +++ /dev/null @@ -1,20 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <longdescription> -Ghemical supports both quantum-mechanics (semi-empirical and ab initio) models -and molecular mechanics models (there is an experimental Tripos 5.2-like force -field for organic molecules). Also a tool for reduced protein models is -included. Geometry optimization, molecular dynamics and a large set of -visualization tools are currently available. -</longdescription> - <use> - <flag name="openbabel">Use <pkg>sci-chemistry/openbabel</pkg> for file - conversions</flag> - <flag name="seamonkey">Add support for the Seamonkey web-browser</flag> - </use> -</pkgmetadata> |