diff options
Diffstat (limited to 'sci-biology/exonerate')
| -rw-r--r-- | sci-biology/exonerate/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/exonerate/exonerate-2.2.0-r1.ebuild | 50 | ||||
| -rw-r--r-- | sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch | 15 | ||||
| -rw-r--r-- | sci-biology/exonerate/metadata.xml | 15 |
4 files changed, 81 insertions, 0 deletions
diff --git a/sci-biology/exonerate/Manifest b/sci-biology/exonerate/Manifest new file mode 100644 index 000000000000..3619350ee4d0 --- /dev/null +++ b/sci-biology/exonerate/Manifest @@ -0,0 +1 @@ +DIST exonerate-2.2.0.tar.gz 509870 SHA256 0ea2720b1388fa329f889522f43029b416ae311f57b229129a65e779616fe5ff SHA512 c0aec4df83fbf6bcd1b27242397349769211ab88d71e2d081e20cb5453a03acd805807535a69841e991cf543d99fcd458cbd22d60b21f0fc6ce813eac45b838c WHIRLPOOL dd7ba7a94b93f41d5ddbc66cc14740973dde20e875f37814229614c85312dcc1de031faab5153bc28be3284144d0f8451bd5e5115f8d9e312e4f88d771ce620c diff --git a/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild b/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild new file mode 100644 index 000000000000..966f7c2f8e01 --- /dev/null +++ b/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils toolchain-funcs + +DESCRIPTION="Generic tool for pairwise sequence comparison" +HOMEPAGE="http://www.ebi.ac.uk/~guy/exonerate/" +SRC_URI="http://www.ebi.ac.uk/~guy/exonerate/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~ppc-macos ~x64-macos" +IUSE="utils test threads" + +REQUIRED_USE="test? ( utils )" + +DEPEND="dev-libs/glib:2" +RDEPEND="${DEPEND}" + +AUTOTOOLS_IN_SOURCE_BUILD=1 + +PATCHES=( "${FILESDIR}"/${P}-asneeded.patch ) + +src_prepare() { + tc-export CC + sed \ + -e 's: -O3 -finline-functions::g' \ + -i configure.in || die + autotools-utils_src_prepare +} + +src_configure() { + local myeconfargs=( + $(use_enable utils utilities) + $(use_enable threads pthreads) + --enable-largefile + --enable-glib2 + ) + autotools-utils_src_configure +} + +src_install() { + autotools-utils_src_install + doman doc/man/man1/*.1 +} diff --git a/sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch b/sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch new file mode 100644 index 000000000000..3268055cd544 --- /dev/null +++ b/sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch @@ -0,0 +1,15 @@ +Fix build with --as-needed + +https://bugs.gentoo.org/268094 + +--- configure.in ++++ configure.in +@@ -289,7 +289,7 @@ + if test "$enable_pthreads" = yes; then + echo "Using PTHREADS" + CFLAGS="$CFLAGS -DUSE_PTHREADS" +- LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" + elif test "$enable_pthreads" = no; then + echo "Not using pthreads" + else diff --git a/sci-biology/exonerate/metadata.xml b/sci-biology/exonerate/metadata.xml new file mode 100644 index 000000000000..711d805d77e7 --- /dev/null +++ b/sci-biology/exonerate/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>je_fro@gentoo.org</email> + <name>Jeff Gardner</name> + </maintainer> + <longdescription lang="en"> + exonerate is a generic tool for pairwise sequence comparison + </longdescription> + <use> + <flag name="utils">Install all utilities</flag> + </use> +</pkgmetadata> |