1 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/maq/maq-0.7.1-r1.ebuild b/sci-biology/maq/maq-0.7.1-r1.ebuild
new file mode 100644
index 000000000000..645a2d65a620
--- /dev/null
+++ b/sci-biology/maq/maq-0.7.1-r1.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+inherit autotools eutils
+
+DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
+HOMEPAGE="http://maq.sourceforge.net/"
+SRC_URI="
+	mirror://sourceforge/${PN}/${P}.tar.bz2
+	mirror://sourceforge/${PN}/calib-36.dat.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+
+RDEPEND="sys-libs/zlib"
+DEPEND="${RDEPEND}"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${P}-flags.patch \
+		"${FILESDIR}"/${P}-bfr-overfl.patch \
+		"${FILESDIR}"/${P}-gcc-4.7.patch
+	sed \
+		-e '/ext_CFLAGS/s:-m64::g' \
+		-i configure* || die
+	eautoreconf
+}
+
+src_install() {
+	default
+	insinto /usr/share/maq
+	doins "${WORKDIR}"/*.dat
+	doman maq.1
+	dodoc ${PN}.pdf
+}