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# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
DISTUTILS_USE_PEP517=setuptools
PYTHON_COMPAT=( python3_{9..11} )
PYTHON_REQ_USE="threads(+)"
VIRTUALX_REQUIRED="manual"
inherit distutils-r1 multiprocessing optfeature virtualx
DESCRIPTION="Powerful data structures for data analysis and statistics"
HOMEPAGE="
https://pandas.pydata.org/
https://github.com/pandas-dev/pandas/
https://pypi.org/project/pandas/
"
SRC_URI="
https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
"
S=${WORKDIR}/${P/_/}
SLOT="0"
LICENSE="BSD"
KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ppc ppc64 ~riscv ~s390 ~sparc ~x86"
IUSE="doc full-support minimal test X"
RESTRICT="!test? ( test )"
RECOMMENDED_DEPEND="
>=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
>=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
"
# TODO: add pandas-gbq to the tree
# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
# https://github.com/statsmodels/statsmodels/issues/8287
OPTIONAL_DEPEND="
dev-python/beautifulsoup4[${PYTHON_USEDEP}]
dev-python/blosc[${PYTHON_USEDEP}]
|| (
dev-python/html5lib[${PYTHON_USEDEP}]
dev-python/lxml[${PYTHON_USEDEP}]
)
dev-python/jinja[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
|| (
dev-python/openpyxl[${PYTHON_USEDEP}]
dev-python/xlsxwriter[${PYTHON_USEDEP}]
)
>=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
>=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
>=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
>=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
>=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
!hppa? (
$(python_gen_cond_dep '
dev-python/statsmodels[${PYTHON_USEDEP}]
' python3_{8..10} )
>=dev-python/scipy-1.1[${PYTHON_USEDEP}]
)
X? (
|| (
dev-python/PyQt5[${PYTHON_USEDEP}]
x11-misc/xclip
x11-misc/xsel
)
)
"
COMMON_DEPEND="
>=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
>=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
>=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
"
DEPEND="
${COMMON_DEPEND}
>=dev-python/cython-0.29.32[${PYTHON_USEDEP}]
doc? (
${VIRTUALX_DEPEND}
app-text/pandoc
dev-python/beautifulsoup4[${PYTHON_USEDEP}]
dev-python/html5lib[${PYTHON_USEDEP}]
dev-python/ipython[${PYTHON_USEDEP}]
dev-python/lxml[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/nbsphinx[${PYTHON_USEDEP}]
>=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
>=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
>=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
dev-python/pytz[${PYTHON_USEDEP}]
dev-python/rpy[${PYTHON_USEDEP}]
dev-python/sphinx[${PYTHON_USEDEP}]
dev-python/xlrd[${PYTHON_USEDEP}]
dev-python/xlwt[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
x11-misc/xclip
)
test? (
${VIRTUALX_DEPEND}
${RECOMMENDED_DEPEND}
${OPTIONAL_DEPEND}
dev-python/beautifulsoup4[${PYTHON_USEDEP}]
>=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
dev-python/openpyxl[${PYTHON_USEDEP}]
dev-python/pymysql[${PYTHON_USEDEP}]
>=dev-python/pytest-6[${PYTHON_USEDEP}]
>=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
dev-python/psycopg:2[${PYTHON_USEDEP}]
dev-python/xlsxwriter[${PYTHON_USEDEP}]
x11-misc/xclip
x11-misc/xsel
)
"
# dev-python/statsmodels invokes a circular dep
# hence rm from doc? ( ), again
RDEPEND="
${COMMON_DEPEND}
!minimal? ( ${RECOMMENDED_DEPEND} )
full-support? ( ${OPTIONAL_DEPEND} )
"
python_prepare_all() {
# Prevent un-needed download during build
sed -e "/^ 'sphinx.ext.intersphinx',/d" \
-i doc/source/conf.py || die
# requires package installed
sed -e '/extra_compile_args =/s:"-Werror"::' \
-i setup.py || die
distutils-r1_python_prepare_all
}
python_compile() {
distutils-r1_python_compile -j1
}
python_compile_all() {
# To build docs the need be located in $BUILD_DIR,
# else PYTHONPATH points to unusable modules.
if use doc; then
cd "${BUILD_DIR}"/lib || die
cp -ar "${S}"/doc . && cd doc || die
LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
fi
}
src_test() {
virtx distutils-r1_src_test
}
python_test() {
local EPYTEST_DESELECT=(
# test for rounding errors, fails if we have better precision
# e.g. on amd64 with FMA or on arm64
# https://github.com/pandas-dev/pandas/issues/38921
pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
# TODO
pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
# TODO: xdist?
pandas/tests/test_expressions.py::TestExpressions::test_run_binary
# TODO: these require a running db server
pandas/tests/io/test_sql.py::TestMySQLAlchemy
pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
# OOMs
pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
)
local -x LC_ALL=C.UTF-8
cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
"${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
epytest pandas --skip-slow --skip-network -m "not single" \
-n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
}
python_install_all() {
if use doc; then
dodoc -r "${BUILD_DIR}"/lib/doc/build/html
einfo "An initial build of docs is absent of references to statsmodels"
einfo "due to circular dependency. To have them included, emerge"
einfo "statsmodels next and re-emerge pandas with USE doc"
fi
distutils-r1_python_install_all
}
pkg_postinst() {
optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
optfeature "for msgpack compression using blosc" dev-python/blosc
optfeature "Template engine for conditional HTML formatting" dev-python/jinja
optfeature "Plotting support" dev-python/matplotlib
optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
optfeature "R I/O support" dev-python/rpy
optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
optfeature "miscellaneous statistical functions" dev-python/scipy
optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
}
|
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