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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit toolchain-funcs
DESCRIPTION="Tools for DNA/RNA sequence database handling and phylogenetic analysis"
HOMEPAGE="http://www.arb-home.de/"
SRC_URI="http://download.arb-home.de/release/${P}/${P}-source.tgz -> ${P}.tgz"
SLOT="0"
LICENSE="arb"
IUSE="debug +opengl test"
KEYWORDS="~amd64 ~x86"
CDEPEND="app-text/sablotron
media-libs/libpng:=
media-libs/tiff:=
www-client/lynx
x11-libs/libXaw
x11-libs/libXpm
x11-libs/motif:0
opengl? (
media-libs/glew:=
media-libs/freeglut
|| (
media-libs/mesa[motif]
( media-libs/mesa x11-libs/libGLw ) ) )"
DEPEND="${CDEPEND}
sys-process/time
x11-misc/makedepend"
RDEPEND="${CDEPEND}
sci-visualization/gnuplot"
# Almost half of tests are broken with debug
RESTRICT="debug? ( test )"
PATCHES=(
"${FILESDIR}"/${PN}-6.0.6-glapi.patch
"${FILESDIR}"/${PN}-6.0.6-tc-flags.patch
"${FILESDIR}"/${PN}-6.0.6-arb_install.patch
)
src_unpack() {
default
mv arbsrc* ${P} || die
}
src_prepare() {
default
cp config.makefile.template config.makefile
mkdir "${S}"/patches.arb || die # Test script expects ${ARBHOME}/patches.arb to exist
if use amd64; then
sed -i -e 's@ARB_64 := 0@ARB_64 := 1@' config.makefile || die
fi
if use opengl; then
sed -i -e 's@OPENGL := 0@OPENGL := 1@' config.makefile || die
fi
if use test; then
sed -i -e 's@UNIT_TESTS := 0@UNIT_TESTS := 1@' config.makefile || die
fi
if use debug; then
sed -i -e 's@DEBUG := 0@DEBUG := 1@' \
-e 's@DEBUG_GRAPHICS := 0@DEBUG_GRAPHICS := 1@' config.makefile || die
fi
}
src_compile() {
emake ARBHOME="${S}" PATH="${S}/bin:${PATH}" LD_LIBRARY_PATH="${S}/lib:${LD_LIBRARY_PATH}" \
CC="$(tc-getCC)" CXX="$(tc-getCXX)" build
}
src_test() {
emake ARBHOME="${S}" PATH="${S}/bin:${PATH}" LD_LIBRARY_PATH="${S}/lib:${LD_LIBRARY_PATH}" \
CC="$(tc-getCC)" CXX="$(tc-getCXX)" run_tests
}
src_install() {
emake ARBHOME="${S}" PATH="${S}/bin:${PATH}" LD_LIBRARY_PATH="${S}/lib:${LD_LIBRARY_PATH}" \
CC="$(tc-getCC)" CXX="$(tc-getCXX)" prepare_libdir
"${S}"/util/arb_compress || die
if use amd64; then
mv arb.tgz arb.64.gentoo.tgz || die
fi
if use x86; then
mv arb.tgz arb.32.gentoo.tgz || die
fi
ln -s arb.*.tgz arb.tgz || die
ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die
cat <<- EOF > "${S}/99${PN}" || die
ARBHOME=/opt/arb
PATH=/opt/arb/bin
LD_LIBRARY_PATH=/opt/arb/lib
EOF
doenvd "${S}/99${PN}"
}
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