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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
DESCRIPTION="Codon usage tables calculated from GenBank"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
SLOT="0"
LICENSE="public-domain"
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
IUSE="emboss minimal"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
DEPEND="emboss? ( sci-biology/emboss )"
RDEPEND="${DEPEND}"
RESTRICT="binchecks strip"
src_compile() {
if use emboss; then
mkdir CODONS || die
ebegin "Indexing CUTG for usage with EMBOSS."
EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
"Indexing CUTG failed."
eend
fi
}
src_install() {
local file
dodoc README CODON_LABEL SPSUM_LABEL
if ! use minimal; then
dodir /usr/share/${PN}
mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \
"Installing raw CUTG database failed."
fi
if use emboss; then
dodir /usr/share/EMBOSS/data/CODONS
cd CODONS || die
for file in *; do
mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS/ || die \
"Installing the EMBOSS-indexed database failed."
done
fi
}
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