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# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
MY_PN="MUSTANG"
SRC_P="${PN}_v${PV}"
MY_P="${MY_PN}_v${PV}"
DESCRIPTION="MUltiple STructural AligNment AlGorithm"
HOMEPAGE="http://www.csse.monash.edu.au/~karun/Site/mustang.html"
SRC_URI="http://www.csse.monash.edu.au/~karun/${PN}/${PN}_v${PV}.tgz"
S="${WORKDIR}/${MY_P}"
LICENSE="BSD"
SLOT="0"
KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
PATCHES=( "${FILESDIR}"/${PN}-3.2.1-gcc-4.7.patch )
src_prepare() {
default
sed -e 's:3.2.1:3.2.2:g' -i Makefile || die
}
src_compile() {
emake \
CPP="$(tc-getCXX)" \
CPPFLAGS="${CXXFLAGS}" \
LDFLAGS="${LDFLAGS}"
}
src_test() {
./bin/${P} -f ./data/test/test_zf-CCHH || die
}
src_install() {
newbin bin/${P} ${PN}
doman man/${PN}.1
dodoc README
}
pkg_postinst() {
elog "If you use this program for an academic paper, please cite:"
elog "Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, and Arthur M. Lesk"
elog "Proteins: Structure, Function, and Bioinformatics. 64(3):559-574, Aug. 2006"
}
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