New upstream version

Package-Manager: portage-2.1.1-r1

6 files changed, 100 insertions, 2 deletions

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
index a4e28e800241..e951d9e730e3 100644
--- a/sci-biology/prosite/ChangeLog
+++ b/sci-biology/prosite/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/prosite
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.87 2006/11/02 20:49:51 grobian Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.88 2006/11/03 00:19:11 ribosome Exp $
+
+*prosite-19.38 (03 Nov 2006)
+
+  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> +prosite-19.38.ebuild:
+  New upstream version.
 
   02 Nov 2006; Fabian Groffen <grobian@gentoo.org> prosite-19.18.ebuild,
   prosite-19.22.ebuild, prosite-19.25.ebuild, prosite-19.29.ebuild,
diff --git a/sci-biology/prosite/files/digest-prosite-19.38 b/sci-biology/prosite/files/digest-prosite-19.38
new file mode 100644
index 000000000000..0947e657d87a
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-19.38
@@ -0,0 +1,3 @@
+MD5 59669fd458fbb3f9d35f9ee71b9d2d9f prosite-19.38.tar.bz2 4542897
+RMD160 09832e7b85ba3b79bccd418909d66e50863a3cfc prosite-19.38.tar.bz2 4542897
+SHA256 8acdcc7232c2de022e0b404e06090dd2578c312552f544c5c916dd862fa430cb prosite-19.38.tar.bz2 4542897
diff --git a/sci-biology/prosite/prosite-19.38.ebuild b/sci-biology/prosite/prosite-19.38.ebuild
new file mode 100644
index 000000000000..1cf2a6874be0
--- /dev/null
+++ b/sci-biology/prosite/prosite-19.38.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.38.ebuild,v 1.1 2006/11/03 00:19:11 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+LICENSE="swiss-prot"
+HOMEPAGE="http://ca.expasy.org/prosite"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )"
+
+src_compile() {
+	if use emboss; then
+		mkdir PROSITE
+		echo
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \
+			"Indexing PROSITE failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins ${PN}.{doc,dat,lis} || die "Installing raw database failed."
+	fi
+	dodoc *.txt || die "Documentation installation failed."
+	dohtml *.htm || die "HTML documentation installation failed."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/* || die "Installing EMBOSS data files failed."
+	fi
+}
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index b468adb7b97b..368bfa875170 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.74 2006/11/02 20:19:00 grobian Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.75 2006/11/03 00:20:40 ribosome Exp $
+
+*rebase-611 (03 Nov 2006)
+
+  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-611.ebuild:
+  New upstream version.
 
   02 Nov 2006; Fabian Groffen <grobian@gentoo.org> rebase-601-r1.ebuild,
   rebase-603.ebuild, rebase-604.ebuild, rebase-606.ebuild,
diff --git a/sci-biology/rebase/files/digest-rebase-611 b/sci-biology/rebase/files/digest-rebase-611
new file mode 100644
index 000000000000..12ed27a3f074
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-611
@@ -0,0 +1,3 @@
+MD5 f233fef712a5f9528155f16063840013 rebase-611.tar.bz2 183868
+RMD160 27681a60625b7dc753d0e98bd0c5ba8de4686fd1 rebase-611.tar.bz2 183868
+SHA256 71ed50d5f7699b1ce5a6534d0744c96ec342b6a074a5008843c3bb1df7ae9ea6 rebase-611.tar.bz2 183868
diff --git a/sci-biology/rebase/rebase-611.ebuild b/sci-biology/rebase/rebase-611.ebuild
new file mode 100644
index 000000000000..9d9a4a9f4119
--- /dev/null
+++ b/sci-biology/rebase/rebase-611.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-611.ebuild,v 1.1 2006/11/03 00:20:40 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+			"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+			"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins embossre.equ || die "Failed to install enzyme prototypes file."
+	fi
+}