Drop old

Package-Manager: portage-2.2.20/cvs/Linux x86_64
Manifest-Sign-Key: 0xE9402A79B03529A2!

3 files changed, 22 insertions, 88 deletions

diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index f127f3dee815..bc452e6923e4 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/bioperl
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.58 2015/05/27 10:14:19 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.59 2015/05/27 16:18:24 jlec Exp $
+
+  27 May 2015; Justin Lecher <jlec@gentoo.org> -bioperl-1.6.0-r2.ebuild:
+  Drop old
 
   27 May 2015; Agostino Sarubbo <ago@gentoo.org> bioperl-1.6.9.ebuild:
   Stable for amd64, wrt bug #539426
diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index 90bfaafd0f4c..ca58a40e5b07 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,27 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
-DIST BioPerl-1.6.0.tar.bz2 5640786 SHA256 50a35b1b2552c8f54c83f2bbba7b36264e94443374b86b389208437c8cae3bf6 SHA512 eb784459e0c735a5864fdb9301148a88e111ed73aa6f01f74711f2414a3341b9bc5d4187a327b5a5f10de7c92cbdfe9654c63dcc5dc3b70f5936a10f1a8e308b WHIRLPOOL 058bc7eacf6b850fed75c32336b1bb7e0fdccf93339533cf13c60047facc3219783a68304b84397ad643efea0d25333dc66aeca6cfbfe051c760025262234f3d
 DIST BioPerl-1.6.901.tar.gz 12284856 SHA256 8c74bde900222ce3926491ee103997c841c8755148c8dcaf0be1abfd61c5ac01 SHA512 227387437c940da1435ed83fad6ec2168ca12a729c90dc557e84750c6474213874c23a8f23e50db4027909469627baee581faa11be6208c8e0a5453a01c7eca4 WHIRLPOOL feb1f93a617e0135ab84b0eeb36ac986e817ce76ada0f40518090f6a480fbb1047339b33fcd11ccff444f89c4a06c41b5abaab66b662a50f17ae34f9b22d66fd
-EBUILD bioperl-1.6.0-r2.ebuild 1814 SHA256 c389353b17a201cff52c738ed3a944d162aab931c53ced4d05f56f24dfd98bf2 SHA512 0d30c36568344bf096b88e2e4ce94f59a6d0d978255c3b038be65caf84d7a44457f620b232115e642b53a4ff322065fb107c0ef4fe06305792f42f1b90688a79 WHIRLPOOL 4c81acd8a0b3a08f757e77f64ff6b10b4a6a8959d394c9a8be5f310af8d9e0de4b6613ce039f7fdc7830a477574f2e21b0e849d7f3fae992c3bf44dbc80e9e8d
 EBUILD bioperl-1.6.9.ebuild 1660 SHA256 ac7917804ac1901a6f661d0141629d57aa0b24ef43bb39c77a03aafaf09bac8e SHA512 d58b7f6874cc498655cf6a387186941240c2f5107aed4b061db0cdfff954276afed0c282e2db875800cc21e1d00decca3ed1839730a097b875b53e8026cce250 WHIRLPOOL bf58f21755a9f6096ab72834141b13c531e19fef7e9be90f7a9d7c586f2fdbc98763a39976453fc02713ed6582ce8db6c35f4f87cb986f89c1bde2cb379fa493
 EBUILD bioperl-9999-r1.ebuild 1951 SHA256 846d6fc690a4b8b980ee2e76e731fd9947c746f9460ac5aae7403ec3959deaac SHA512 76e96ed370775d52c0046e1d1d5e4bcbadc83baee8c053e93cda243aed85e41b8fe5b0a9ccfb11cacea5ba359d8b4928ea2a3dc7d415511d4c45605887a53ab0 WHIRLPOOL 2ac566fbf3d3ea585ba7a26ede6231bbbd4031d9663c134eebdcc40bb39733766f7cc391cb18dde3b82971bfe291d7abfd12a5fb3691abd12f3cb30f7cd494a2
-MISC ChangeLog 9817 SHA256 a99bf8f39b793116bd3dfd0663cbb81db465308c08e5ea9e020a93eb4a7b2000 SHA512 e4e661877c4605c5c9a96229621b8f0b0100511e5f33997629e2458ece4c4520c06ba2924428f01a4b8528562e40ef9136fb579285f33196c5f438302ea9b1f6 WHIRLPOOL 3528cd9ec190d40fa7fbaec230cd83bd9cc8a1bc5bed78504f5d7e3cd61fec5b44ce18b2134ca6549207cdcc3806e2f384dfee56a09a5ef5bffa426b5d8c8741
+MISC ChangeLog 9903 SHA256 40538df519907ccc2f0f2b5d2a241b333851c33a3db959edc9190b4a9a611dfd SHA512 4f8eaa1ddadc1401bda065b8f41068ad563bcc5a156b226dcb234db86513476ed1f27600fe7cee6bc773341079149830f4d7d85150f3f154d63c67622d200756 WHIRLPOOL a7733d4eb9df5afdf14cf4277300c220b998c9afca33b9137ce8bf4fb616a69e58cffe95fbec034f0c41a9122305d3a7a3a196e04eadc9d99584a9a511bb606c
 MISC metadata.xml 440 SHA256 5360673bcd3c5b31e60fc54f1865790aae76e299e82b5e6a41c5e37d026cccaf SHA512 d691277d3ddf5d944c2898440a4ff4ac6649366d81265599f9e0d23ea1db6745f7578112a73f04d1cfb705789ddec754c82b0a9590989f6ef41124e87d57d260 WHIRLPOOL e3a8031ab9b2ab901ce5e3371e6af05d85fced36582f61491a0a7f24e256888bf5a065189a6dba4d7e5f6dbf28d88b7b050a4fe29ae3d5716d15ac4cc74be86b
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diff --git a/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild b/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild
deleted file mode 100644
index 5e531ecac2ee..000000000000
--- a/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild,v 1.6 2014/08/09 22:46:03 zlogene Exp $
-
-EAPI="5"
-
-inherit perl-module
-
-SUBPROJECTS="+db +network +run"
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/"
-SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="-minimal graphviz ${SUBPROJECTS}"
-
-CDEPEND="dev-perl/Data-Stag
-	dev-perl/libwww-perl
-	!minimal? (
-		dev-perl/Ace
-		dev-perl/Spreadsheet-ParseExcel
-		dev-perl/Spreadsheet-WriteExcel
-		>=dev-perl/XML-SAX-0.15
-		dev-perl/Graph
-		dev-perl/SOAP-Lite
-		dev-perl/Array-Compare
-		dev-perl/SVG
-		dev-perl/XML-Simple
-		dev-perl/XML-Parser
-		dev-perl/XML-Twig
-		>=dev-perl/HTML-Parser-3.60
-		>=dev-perl/XML-Writer-0.4
-		dev-perl/Clone
-		dev-perl/XML-DOM
-		dev-perl/set-scalar
-		dev-perl/XML-XPath
-		dev-perl/XML-DOM-XPath
-		dev-perl/Algorithm-Munkres
-		dev-perl/Data-Stag
-		dev-perl/Math-Random
-		dev-perl/PostScript
-		dev-perl/Convert-Binary-C
-		dev-perl/SVG-Graph
-	)
-	graphviz? ( dev-perl/GraphViz )"
-DEPEND="virtual/perl-Module-Build
-	${CDEPEND}"
-RDEPEND="${CDEPEND}"
-PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
-	db? ( >=sci-biology/bioperl-db-${PV} )
-	network? ( >=sci-biology/bioperl-network-${PV} )
-	run? ( >=sci-biology/bioperl-run-${PV} )"
-
-S="${WORKDIR}/BioPerl-${PV}"
-
-src_configure() {
-	sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
-		-e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" || die
-	if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
-	perl-module_src_configure
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS FAQ"
-	perl-module_src_install
-}