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* Do not install shuffle. We use the one from hmmer.Jeffrey Gardner2008-06-223-5/+8
* Rely on squid from hmmer. Fixes bug #208462Jeffrey Gardner2008-06-223-16/+16
* New package from sunrise, bug 175116Andrey Kislyuk2008-06-204-0/+49
* add changelogAndrey Kislyuk2008-06-172-2/+2
* add changelogAndrey Kislyuk2008-06-172-2/+8
* Version bump and add gcc-4.3 patch, bug 227597, thanks to Marek MillerAndrey Kislyuk2008-06-173-4/+95
* Add patch for previous commitAndrey Kislyuk2008-06-171-0/+12
* Add gcc-4.3 patch, bug 227561, thanks to Marek MillerAndrey Kislyuk2008-06-172-2/+11
* Slightly modified gcc-4.3 patch since it got mangled by cvs during commit.Markus Dittrich2008-06-173-24/+30
* Added new revision with fix for gcc-4.3 compile issues (bug #227245).Markus Dittrich2008-06-165-6/+139
* Add smp option thanks to Timon Van Overveldt in bug #194423Jeffrey Gardner2008-06-153-3/+8
* Latest x86_64 beta clientJeffrey Gardner2008-06-148-36/+47
* Removed old ebuild with bad autotools usage (fixes bug #226609).Markus Dittrich2008-06-144-88/+9
* amd64 stable, bug #213362Kenneth Prugh2008-06-113-5/+8
* Switched virtual/tetex -> virtual/latex-base and added amd64 keyword (see bug...Markus Dittrich2008-06-093-8/+12
* Fix Manifest for bug #223717Jeffrey Gardner2008-05-272-13/+6
* New package from sunrise, bug 175293Andrey Kislyuk2008-05-263-0/+48
* + ~amd64Andrey Kislyuk2008-05-263-3/+7
* + ~amd64Andrey Kislyuk2008-05-262-2/+3
* + ~amd64Andrey Kislyuk2008-05-262-4/+4
* New package from sunrise, bug 169793Andrey Kislyuk2008-05-244-0/+70
* +metadata.xmlAndrey Kislyuk2008-05-231-0/+9
* New package from sunrise, bug 135307Andrey Kislyuk2008-05-234-0/+56
* New package from sunrise, bug 135103Andrey Kislyuk2008-05-233-0/+38
* Stable on ppc64Markus Rothe2008-05-123-5/+8
* Add Changelog entryJeffrey Gardner2008-05-122-2/+5
* Move pmake to RDEPEND to fix bug #221441Jeffrey Gardner2008-05-125-15/+23
* Version bump.Markus Dittrich2008-05-013-3/+66
* whitespaceMichael Sterrett2008-04-262-13/+3
* Add the Java version, which is actually maintained. This could possibly use s...Donnie Berkholz2008-04-263-3/+69
* Pruned old version. Added 20080302 to x86 and amd64 (fixed bug #218233).Olivier Fisette2008-04-224-176/+9
* Version bump (fixes bug #218232).Markus Dittrich2008-04-204-6/+53
* Version bump and gcc-4.3 compatibility patch (fixes bug #217921).Markus Dittrich2008-04-175-3/+107
* Fix build with gcc 4.3.Donnie Berkholz2008-04-154-6/+66
* Latest release from NCBI.Jeffrey Gardner2008-04-153-12/+227
* Bump.Donnie Berkholz2008-04-143-6/+81
* Try again..Donnie Berkholz2008-04-081-5/+5
* Fix manifest, connection dropped mid-commit.Donnie Berkholz2008-04-081-1/+4
* (#195251) Fix build with --as-needed by always linking against dynamic librar...Donnie Berkholz2008-04-082-2/+10
* Respect CFLAGS and compiler on 64-bit systems. Apparently I'm the only person...Donnie Berkholz2008-04-083-6/+28
* Bump. Bug fixes and undocumented new features.Donnie Berkholz2008-03-213-3/+58
* amd64 stable, bug #207095Kenneth Prugh2008-03-173-15/+8
* (#213362) Keyword ~amd64.Donnie Berkholz2008-03-173-7/+10
* stable x86/amd64, bug 207096Christian Faulhammer2008-02-173-7/+20
* stable x86/amd64, bug 208416Christian Faulhammer2008-02-173-5/+18
* stable amd64, bug 207109Christian Faulhammer2008-02-173-8/+12
* quote variablesChristian Faulhammer2008-02-173-12/+16
* stable x86, bug 207109Christian Faulhammer2008-02-173-7/+21
* x86 stable, bug #207095Markus Meier2008-02-163-5/+18
* Stable on ppc wrt bug 207095Gysbert Wassenaar2008-02-153-5/+8