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* ppc stable wrt bug #520776; Drop old.Mikle Kolyada2014-08-294-119/+14
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xC42EB5D6
* Stable on amd64 and x86, wrt bug #520776Sergey Popov2014-08-293-12/+15
| | | | | Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* QA: move AUTOTOOLS_IN_SOURCE_BUILD definition beforce inheriting autotools ↵Sergey Popov2014-08-293-23/+20
| | | | | | | eclass, drop obsolete python 2.6 support Package-Manager: portage-2.2.12/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* bumped EAPI to 5 to support dev-lang/perl upgradesIan Stakenvicius2014-08-273-11/+17
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* QA: drop trailing '.' from DESCRIPTIONSergei Trofimovich2014-08-108-29/+33
| | | | | Package-Manager: portage-2.2.11_p9/cvs/Linux x86_64 Manifest-Sign-Key: 0x611FF3AA
* Bump to EAPI=5 (bug #478714)Mikle Kolyada2014-08-0920-90/+99
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xC42EB5D6
* Stable for ppc, wrt bug #512118Agostino Sarubbo2014-08-033-23/+23
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* sci-biology/rebase: Version BumpJustin Lecher2014-07-313-17/+72
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Non-maintainer commit. Update to use virtual/mysql wrt bug 508802Brian Evans2014-07-306-23/+30
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* x86 stable wrt bug #512118Paweł Hajdan2014-07-273-12/+21
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* Stable for amd64 wrt bug #512118José María Alonso2014-07-173-22/+17
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xD628E536
* version bump; license changed, is slightly more lax nowIan Stakenvicius2014-07-163-7/+98
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* Bump to EAPI=5Mikle Kolyada2014-07-153-13/+17
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xC42EB5D6
* Depend on virtual/perl-x instead of perl-core/xAndreas Hüttel2014-07-103-12/+27
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xEBE6A336BE19039C!
* Remove oldAndreas Hüttel2014-07-093-40/+23
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* sci-biology/infernal: Add patch as binary to prevent CVS magics, #431076Justin Lecher2014-07-064-29/+54
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* sci-biology/abyss: Add missing dep on boost, #515156Justin Lecher2014-07-063-26/+10
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* sci-biology/ncbi-tools++ removal. This version doesn't build with gnutls-3. ↵Manuel Rüger2014-06-3010-1173/+0
| | | | See bug #421777.
* Convert to distutils-r1. Depend on setuptools.Mike Gilbert2014-06-304-29/+39
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0x0BBEEA1FEA4843A4
* sci-biology/rebase: Version BUmp, fixes broken snapshot, #512286Justin Lecher2014-06-043-5/+33
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/biopython: Version Bump, thanks Martin Mokrejs ↵Justin Lecher2014-06-033-16/+71
| | | | | | | <mmokrejs@fold.natur.cuni.cz> preparing the ebuild Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BUmp; clean oldJustin Lecher2014-06-027-227/+13
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* Add bedtools 2.20.1 thanks to Martin Mokrejs (bug #505538)Sven Vermeulen2014-05-303-5/+55
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* sci-biology/plink: Version BUmp, #510716Justin Lecher2014-05-194-41/+84
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* sci-biology/update-blastdb: Fix typoJustin Lecher2014-05-193-19/+22
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/psipred: Add additional dep on sci-biology/update-blastJustin Lecher2014-05-148-39/+44
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/ncbi-tools++: Block sci-biology/update-blastdbJustin Lecher2014-05-143-11/+28
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/update-blastdb: New addition, written by meJustin Lecher2014-05-143-2/+58
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/update-blastdb: New addition, written by meJustin Lecher2014-05-142-0/+14
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Remove ruby18 target.Manuel Rüger2014-05-074-11/+15
| | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64
* sci-biology/biopython: Import changes from sci overlayJustin Lecher2014-05-075-15/+119
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* sci-biology/profphd: Fix for newer perl, version BumpJustin Lecher2014-04-245-10/+88
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* Fix LICENSE, add mirror and bindist restrictions, update SRC_URI, bug 470778.Ulrich Müller2014-04-173-15/+25
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* sci-biology/psipred: Version BumpJustin Lecher2014-04-073-16/+81
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* New e-mail address.Jeroen Roovers2014-03-243-21/+12
| | | | | Package-Manager: portage-2.2.9-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xA792A613
* sci-biology/samtools: Fix symlink creation, thanks Martin Mokrejs telling me ↵Justin Lecher2014-03-233-15/+11
| | | | | | | that Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BumpJustin Lecher2014-03-063-3/+78
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/tophat: Version Bump, #502532; thanks José María Fernández ↵Justin Lecher2014-03-064-8/+185
| | | | | | | González for the new ebuild Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Reference correct library name on Darwin, thanks Linlin Yan in bug #491812Fabian Groffen2014-02-113-24/+16
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* Version bump of sci-biology/readseqJohann Schmitz2014-02-083-9/+54
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* Dropped unneeded patch files and dropped unneeded dependencies (bug #500488 ↵Johann Schmitz2014-02-088-340/+47
| | | | | | | and #239161) Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* Revision bump: EAPI 5, add subslot to Boost dependency, fix compatibility ↵Sergey Popov2014-02-054-20/+33
| | | | | | | with Automake 1.14, wrt bug #499046. Drop old revision Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* Revision bump: EAPI 5, add subslot to Boost dependency, fix underlinking on ↵Sergey Popov2014-02-053-7/+54
| | | | | | | Boost components, wrt bug #499038 Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* Version BUmpJustin Lecher2014-01-303-16/+70
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* sci-biology/clustalw: Drop oldJustin Lecher2014-01-273-53/+19
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for sparc, wrt bug #497214Agostino Sarubbo2014-01-263-18/+21
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* Stable for ppc64, wrt bug #497214Agostino Sarubbo2014-01-193-18/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc64" Manifest-Sign-Key: 0x7194459F
* Stable for alpha, wrt bug #497214Agostino Sarubbo2014-01-183-18/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="alpha" Manifest-Sign-Key: 0x7194459F
* Spelling.Jeroen Roovers2014-01-173-12/+14
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* sci-biology/seaview: Drop oldJustin Lecher2014-01-143-94/+19
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